Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0137531 Rosa chinensis HOM05D037165 ORTHO05D020382 1.5e-52 209.1 101 100.0
FvH4_5g06181 Fragaria vesca HOM05D000003 ORTHO05D000004 4.5e-28 127.9 83 71.1
CiPaw.16G066600 Carya illinoinensis HOM05D000003 ORTHO05D020382 4.8e-14 81.3 86 43.0
FvH4_5g24782 Fragaria vesca HOM05D000003 ORTHO05D000004 8.2e-14 80.5 48 68.8
CANSAT21G1305 Cannabis sativa HOM05D000003 ORTHO05D000006 9.1e-13 77.0 86 41.9
CiPaw.06G011600 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.5e-12 75.1 87 33.3
CANSAT01G2119 Cannabis sativa HOM05D000003 ORTHO05D000006 4.5e-12 74.7 90 36.7
QL08p004291 Quercus lobata HOM05D000003 ORTHO05D000006 5.9e-12 74.3 89 39.3
CANSAT56G3772 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-11 73.2 86 40.7
CANSAT78G2353 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-11 73.2 86 40.7
CANSAT25G0902 Cannabis sativa HOM05D000003 ORTHO05D000006 2.2e-11 72.4 90 31.1
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-11 72.4 90 36.7
CANSAT64G0903 Cannabis sativa HOM05D000003 ORTHO05D000006 2.2e-11 72.4 90 35.6
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-11 72.0 91 34.1
CANSAT01G1362 Cannabis sativa HOM05D000003 ORTHO05D000006 3.8e-11 71.6 90 35.6
CANSAT56G0006 Cannabis sativa HOM05D000003 ORTHO05D000006 5.0e-11 71.2 90 34.4
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-11 70.9 96 32.3
CANSAT64G2324 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-11 70.9 90 35.6
CANSAT64G1542 Cannabis sativa HOM05D000003 ORTHO05D000006 8.5e-11 70.5 91 35.2
FvH4_4g08952 Fragaria vesca HOM05D000003 ORTHO05D020382 8.5e-11 70.5 97 33.0
Sed0027500 Sechium edule HOM05D000003 ORTHO05D000006 8.5e-11 70.5 89 39.3
CiPaw.08G126800 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.1e-10 70.1 91 31.9
FvH4_3g22561 Fragaria vesca HOM05D000003 ORTHO05D000006 1.1e-10 70.1 77 41.6
TWI38G0206 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 1.1e-10 70.1 89 32.6
CANSAT25G3037 Cannabis sativa HOM05D000003 ORTHO05D000006 1.5e-10 69.7 91 33.0
CANSAT35G0840 Cannabis sativa HOM05D000003 ORTHO05D000006 1.5e-10 69.7 90 31.1
CANSAT78G1210 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-10 69.7 94 30.9
CANSAT80G2461 Cannabis sativa HOM05D000003 ORTHO05D000006 1.5e-10 69.7 90 33.3
FvH4_3g37471 Fragaria vesca HOM05D000003 ORTHO05D000006 1.5e-10 69.7 91 38.5
FvH4_6g16753 Fragaria vesca HOM05D000003 ORTHO05D000006 1.5e-10 69.7 93 38.7
CANSAT36G0004 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-10 69.3 91 30.8
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-10 69.3 91 33.0
CANSAT56G2039 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-10 68.9 91 35.2
CANSAT80G2809 Cannabis sativa HOM05D000003 ORTHO05D000006 2.5e-10 68.9 90 34.4
Atru.chr11.694 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-10 67.8 89 32.6
Atru.chr6.1099 Acer truncatum HOM05D000003 ORTHO05D000006 5.5e-10 67.8 89 33.7
CANSAT35G1937 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-10 67.8 91 30.8
CANSAT56G0533 Cannabis sativa HOM05D000003 ORTHO05D000004 9.4e-10 67.0 90 33.3
CiPaw.16G004600 Carya illinoinensis HOM05D000003 ORTHO05D000006 9.4e-10 67.0 90 32.2
CANSAT01G3288 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-09 66.6 90 33.3
CANSAT64G1654 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-09 66.6 91 30.8
FvH4_4g14101 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-09 66.6 92 40.2
CANSAT35G0113 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-09 66.2 90 34.4
CANSAT01G0387 Cannabis sativa HOM05D000003 ORTHO05D000006 2.1e-09 65.9 90 32.2
CANSAT21G2319 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-09 65.5 90 33.3
Manes.11G107251 Manihot esculenta HOM05D000003 ORTHO05D000006 2.7e-09 65.5 93 30.1
Nn3g17029 Nelumbo nucifera HOM05D000003 ORTHO05D000006 2.7e-09 65.5 87 35.6
CANSAT11G0329 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-09 65.1 90 30.0
CiPaw.16G000200 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.6e-09 65.1 90 30.0
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 3.6e-09 65.1 93 32.3
Rhsim10G0112100 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.6e-09 65.1 95 34.7
CANSAT25G3782 Cannabis sativa HOM05D000003 ORTHO05D000006 4.7e-09 64.7 90 33.3
CANSAT80G2702 Cannabis sativa HOM05D000003 ORTHO05D000006 4.7e-09 64.7 91 30.8
Rhsim05G0162800 Rhododendron simsii HOM05D001637 ORTHO05D000006 6.1e-09 64.3 95 34.7
Atru.chr13.2020 Acer truncatum HOM05D000003 ORTHO05D000006 8.0e-09 63.9 77 36.4
CANSAT80G2730 Cannabis sativa HOM05D000003 ORTHO05D000004 8.0e-09 63.9 91 30.8
Manes.07G125402 Manihot esculenta HOM05D000003 ORTHO05D000006 8.0e-09 63.9 93 29.0
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 8.0e-09 63.9 91 31.9
CANSAT11G2283 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-08 63.5 90 32.2
Manes.05G055002 Manihot esculenta HOM05D000003 ORTHO05D000004 1.0e-08 63.5 93 30.1
Atru.chr13.2083 Acer truncatum HOM05D000003 ORTHO05D000006 1.4e-08 63.2 91 28.6
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-08 62.8 89 30.3
Hma1.2p1_0266F.1_g106910 Hydrangea macrophylla HOM05D000003 ORTHO05D000006 1.8e-08 62.8 83 36.1
SHI08642 Sapria himalayana HOM05D000003 ORTHO05D000006 1.8e-08 62.8 92 28.3
CANSAT54G1077 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-08 62.4 90 28.9
QL02p056055 Quercus lobata HOM05D000003 ORTHO05D000126 2.3e-08 62.4 91 31.9
TAR256G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000126 2.3e-08 62.4 75 36.0
CANSAT54G1425 Cannabis sativa HOM05D000003 ORTHO05D000006 3.0e-08 62.0 87 34.5
FvH4_5g18832 Fragaria vesca HOM05D000003 ORTHO05D000006 3.0e-08 62.0 91 37.4
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 3.0e-08 62.0 84 33.3
FvH4_2g28261 Fragaria vesca HOM05D000003 ORTHO05D000006 5.2e-08 61.2 91 37.4
SHI30881 Sapria himalayana HOM05D000003 ORTHO05D000006 5.2e-08 61.2 92 29.3
FvH4_7g04461 Fragaria vesca HOM05D037165 ORTHO05D020382 6.7e-08 60.8 69 40.6
FAN06G3701 Fragaria x ananassa HOM05D037165 ORTHO05D020382 6.7e-08 60.8 69 40.6
Atru.chr12.2231 Acer truncatum HOM05D000003 ORTHO05D000006 8.8e-08 60.5 94 30.9
Duzib187G1686 Durio zibethinus HOM05D000003 ORTHO05D000006 8.8e-08 60.5 89 28.1
CANSAT13G0005 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-07 60.1 90 27.8
CANSAT56G2204 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.1 94 30.9
CANSAT78G1810 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.1 89 30.3
Medtr1g036710 Medicago truncatula HOM05D000003 ORTHO05D000006 1.1e-07 60.1 92 30.4
Medtr6g034215 Medicago truncatula HOM05D000003 ORTHO05D000006 1.1e-07 60.1 90 30.0
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.1e-07 60.1 87 33.3
CANSAT64G0941 Cannabis sativa HOM05D000003 ORTHO05D000006 1.5e-07 59.7 89 29.2
RcHm_v2.0_Chr5g0016671 Rosa chinensis HOM05D000003 ORTHO05D000006 1.5e-07 59.7 92 37.0
Manes.01G039212 Manihot esculenta HOM05D000003 ORTHO05D000006 2.0e-07 59.3 87 33.3
QL10p059361 Quercus lobata HOM05D000003 ORTHO05D000126 2.0e-07 59.3 91 27.5
CANSAT01G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-07 58.9 89 31.5
CANSAT35G1977 Cannabis sativa HOM05D000003 ORTHO05D000006 2.6e-07 58.9 87 32.2
Medtr2g018005 Medicago truncatula HOM05D000003 ORTHO05D000006 2.6e-07 58.9 90 33.3
Atru.chr10.138 Acer truncatum HOM05D000003 ORTHO05D000006 3.3e-07 58.5 87 29.9
CANSAT64G1006 Cannabis sativa HOM05D000003 ORTHO05D000006 3.3e-07 58.5 90 26.7
Gohir.D07G146566 Gossypium hirsutum HOM05D000003 ORTHO05D000006 3.3e-07 58.5 89 28.1
QL01p035015 Quercus lobata HOM05D000003 ORTHO05D000006 4.4e-07 58.2 94 31.9
Rhsim09G0068100 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.4e-07 58.2 89 31.5
Atru.chr9.1114 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-07 57.8 85 34.1
CANSAT25G3699 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-07 57.8 86 33.7
FvH4_6g38132 Fragaria vesca HOM05D000003 ORTHO05D000006 5.7e-07 57.8 67 37.3
Medtr2g043870 Medicago truncatula HOM05D000003 ORTHO05D000006 5.7e-07 57.8 90 33.3
QL04p091229 Quercus lobata HOM05D000003 ORTHO05D000006 5.7e-07 57.8 89 31.5
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 5.7e-07 57.8 94 29.8
QL04p019272 Quercus lobata HOM05D000003 ORTHO05D000006 7.5e-07 57.4 98 27.6
Atru.chr6.242 Acer truncatum HOM05D000003 ORTHO05D000006 1.7e-06 56.2 62 38.7
CANSAT01G3218 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 56.2 74 35.1
FvH4_6g19793 Fragaria vesca HOM05D000003 ORTHO05D000006 1.7e-06 56.2 91 36.3
Medtr6g009010 Medicago truncatula HOM05D000003 ORTHO05D000006 2.2e-06 55.8 88 33.0
Atru.chr13.2518 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-06 55.5 90 30.0
CANSAT54G1203 Cannabis sativa HOM05D000003 ORTHO05D000006 2.8e-06 55.5 89 30.3
CANSAT56G4053 Cannabis sativa HOM05D000003 ORTHO05D000006 2.8e-06 55.5 74 36.5
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-06 55.5 89 31.5
Rhsim09G0065000 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.8e-06 55.5 78 32.1
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 3.7e-06 55.1 66 36.4
Potri.001G190450 Populus trichocarpa HOM05D000003 ORTHO05D000006 3.7e-06 55.1 90 28.9
CANSAT25G1351 Cannabis sativa HOM05D000003 ORTHO05D000006 4.8e-06 54.7 74 35.1
Rhsim02G0238600 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.8e-06 54.7 78 34.6
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-06 54.3 69 34.8
CANSAT78G0187 Cannabis sativa HOM05D000003 ORTHO05D000004 6.3e-06 54.3 90 32.2
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 8.2e-06 53.9 90 32.2


User provided reference genes

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