Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 0.0e+00 1313.9 700 100.0
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.0e-267 926.8 728 74.2
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.5e-266 922.2 728 73.4
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.2e-244 850.1 728 69.9
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.3e-218 762.3 592 75.5
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 4.2e-165 585.9 736 51.0
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 2.1e-116 424.1 686 43.3
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.1e-112 411.8 740 38.8
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.8e-112 411.0 760 40.0
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 2.9e-110 403.7 762 40.2
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 8.6e-102 375.6 903 34.6
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 4.3e-101 373.2 916 34.7
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.2e-96 357.1 748 38.0
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 4.6e-95 353.2 748 36.8
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 4.6e-95 353.2 758 36.0
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 8.6e-94 349.0 870 34.6
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 5.6e-93 346.3 745 36.2
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.0e-90 337.8 739 38.0
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.0e-90 337.8 739 38.0
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 3.2e-88 330.5 837 34.3
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 5.4e-88 329.7 758 36.4
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.2e-87 328.6 727 37.8
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.0e-86 325.5 727 36.0
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 6.6e-86 322.8 734 36.2
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 6.6e-86 322.8 719 34.8
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 2.5e-85 320.9 824 36.3
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.2e-84 318.5 757 34.9
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 2.8e-84 317.4 780 34.7
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.6e-84 317.0 737 35.0
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 4.7e-84 316.6 652 37.6
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.0e-83 313.5 750 36.4
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 5.8e-82 309.7 736 36.0
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 9.9e-82 308.9 661 36.3
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.4e-80 305.1 750 33.9
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 5.4e-80 303.1 838 33.5
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 3.0e-78 297.4 767 35.2
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.6e-76 291.6 663 36.3
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 8.1e-76 289.3 663 36.7
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.2e-73 281.2 666 35.9
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 2.2e-73 281.2 729 33.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 6.4e-73 279.6 814 32.1
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 6.4e-73 279.6 766 32.6
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.4e-73 279.3 751 34.1
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.1e-72 278.9 752 34.6
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 1.9e-72 278.1 740 33.8
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 3.2e-72 277.3 683 34.6
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 5.4e-72 276.6 380 47.1
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 1.2e-71 275.4 744 33.6
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 7.8e-71 272.7 664 35.4
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.7e-70 271.6 701 34.5
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 2.3e-70 271.2 767 32.5
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 2.5e-69 267.7 737 33.6
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 2.5e-69 267.7 722 33.9
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 5.6e-69 266.5 686 34.5
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 1.6e-68 265.0 724 34.0
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.6e-68 265.0 840 31.1
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 2.4e-67 261.2 746 33.2
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 1.7e-65 255.0 653 33.5
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.4e-64 251.9 626 37.9
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.6e-63 248.4 569 36.0
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.6e-63 248.4 860 30.3
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.5e-61 241.1 752 32.7
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 3.3e-61 240.7 717 31.2
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 7.3e-61 239.6 696 32.8
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 4.8e-60 236.9 731 33.0
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.4e-59 234.6 782 32.1
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 5.3e-59 233.4 775 30.7
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 9.0e-59 232.6 350 44.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.2e-58 232.3 846 28.1
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 2.0e-58 231.5 748 30.1
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 7.6e-58 229.6 666 32.6
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.9e-57 227.6 789 30.2
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 3.8e-57 227.3 654 33.8
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 3.8e-57 227.3 769 30.6
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.4e-56 225.3 414 39.1
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 2.4e-56 224.6 734 30.7
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 9.3e-56 222.6 693 31.2
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.2e-55 222.2 742 30.6
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 4.6e-55 220.3 557 36.6
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 2.3e-54 218.0 940 30.1
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 3.9e-54 217.2 729 31.3
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.1e-53 215.7 745 31.4
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 1.5e-53 215.3 743 29.9
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 4.3e-53 213.8 712 30.3
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 6.2e-52 209.9 685 29.2
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 9.0e-51 206.1 723 29.9
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.5e-50 205.3 929 28.1
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.0e-50 204.9 713 29.5
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 7.6e-50 203.0 808 30.0
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.3e-49 202.2 777 28.8
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 8.4e-49 199.5 809 29.4
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.4e-48 198.7 937 27.1
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 4.2e-48 197.2 694 31.6
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 7.1e-48 196.4 756 30.3
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 6.0e-47 193.4 776 29.3
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.6e-44 185.3 784 28.7
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.6e-44 185.3 442 34.6
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 1.5e-42 178.7 787 28.2
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 2.0e-42 178.3 640 28.9
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 3.4e-42 177.6 780 28.6
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 7.6e-42 176.4 778 28.1
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 2.2e-41 174.9 789 28.3
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 2.9e-41 174.5 738 27.1
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 1.1e-40 172.6 785 28.2
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.9e-40 171.8 730 29.2
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 1.9e-40 171.8 783 28.1
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.6e-39 168.7 757 26.8
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 4.6e-39 167.2 619 28.9
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 5.1e-38 163.7 447 33.3
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.5e-37 162.2 521 31.7
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 7.4e-37 159.8 768 27.9
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 2.4e-35 154.8 700 27.6
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 2.0e-34 151.8 738 26.7
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 3.4e-34 151.0 745 29.1
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.4e-34 151.0 381 34.6
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 7.6e-34 149.8 421 32.3
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 7.6e-34 149.8 900 25.4
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.0e-33 149.4 699 26.2
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 4.2e-32 144.1 146 54.8
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 6.7e-30 136.7 674 27.2
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 4.3e-29 134.0 773 25.0
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.3e-28 132.5 146 53.4
RcHm_v2.0_Chr2g0137471 Rosa chinensis HOM05D013195 ORTHO05D020618 3.7e-28 131.0 83 80.7
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.2e-26 125.9 563 28.6
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.5e-26 124.0 606 28.7
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.5e-25 120.2 141 48.9
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.3e-22 111.7 121 52.9
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.1e-21 109.4 106 52.8
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 2.2e-20 105.1 316 30.4
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 6.9e-19 100.1 164 42.1
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 4.5e-18 97.4 121 47.1
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 2.7e-15 88.2 659 24.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 8.0e-15 86.7 144 43.8
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 5.2e-14 84.0 115 46.1
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 8.8e-14 83.2 83 49.4
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 2.6e-13 81.6 761 22.6
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 4.4e-13 80.9 314 27.4
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 9.7e-13 79.7 129 39.5
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.7e-12 79.0 162 36.4
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 2.8e-12 78.2 680 22.4
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 4.1e-11 74.3 185 31.9
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 4.1e-11 74.3 51 68.6
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 5.3e-11 73.9 169 36.1
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 2.9e-09 68.2 84 44.0
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 1.6e-07 62.4 98 37.8
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 1.6e-07 62.4 113 41.6


User provided reference genes

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