Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0137341 Rosa chinensis HOM05D001338 ORTHO05D001239 1.1e-38 162.9 87 100.0
RcHm_v2.0_Chr1g0379061 Rosa chinensis HOM05D001338 ORTHO05D001239 2.2e-23 112.1 60 96.7
RcHm_v2.0_Chr5g0059431 Rosa chinensis HOM05D001338 ORTHO05D001239 1.6e-18 95.9 60 80.0
RcHm_v2.0_Chr7g0198801 Rosa chinensis HOM05D001338 ORTHO05D001239 1.6e-18 95.9 60 80.0
RcHm_v2.0_Chr5g0015121 Rosa chinensis HOM05D001338 ORTHO05D001239 3.6e-18 94.7 60 78.3
RcHm_v2.0_Chr7g0205811 Rosa chinensis HOM05D001338 ORTHO05D001239 3.6e-18 94.7 60 78.3
RcHm_v2.0_Chr3g0452101 Rosa chinensis HOM05D001338 ORTHO05D001239 8.1e-18 93.6 60 76.7
RcHm_v2.0_Chr5g0034331 Rosa chinensis HOM05D001338 ORTHO05D001239 1.4e-17 92.8 60 78.3
RcHm_v2.0_Chr7g0200001 Rosa chinensis HOM05D001338 ORTHO05D001239 1.8e-17 92.4 60 76.7
RcHm_v2.0_Chr3g0449931 Rosa chinensis HOM05D001338 ORTHO05D001239 1.5e-16 89.4 60 73.3
MD01G1087700 Malus domestica HOM05D001113 ORTHO05D000968 3.2e-14 81.6 59 71.2
CARHR034340 Cardamine hirsuta HOM05D001338 ORTHO05D001239 1.6e-13 79.3 55 70.9
AUR62026124 Chenopodium quinoa HOM05D001338 ORTHO05D001239 3.5e-13 78.2 55 65.5
EL10Ac3g06626 Beta vulgaris HOM05D001338 ORTHO05D001239 1.0e-12 76.6 55 67.3
FvH4_6g47641 Fragaria vesca HOM05D001338 ORTHO05D001239 1.3e-12 76.3 59 62.7
Oeu008701.1 Olea europaea HOM05D001338 ORTHO05D001239 1.3e-12 76.3 60 66.7
CSS0006650 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.7e-12 75.9 60 63.3
CSS0011720 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.7e-12 75.9 60 63.3
CSS0023742 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.7e-12 75.9 60 63.3
CSS0027088 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.7e-12 75.9 60 63.3
TWI74G0957 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 2.3e-12 75.5 60 61.7
CSS0047876 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 3.9e-12 74.7 55 65.5
CANSAT35G0728 Cannabis sativa HOM05D001338 ORTHO05D001239 3.9e-12 74.7 58 62.1
Oeu003192.1 Olea europaea HOM05D001338 ORTHO05D001239 3.9e-12 74.7 60 65.0
Oeu012004.1 Olea europaea HOM05D001338 ORTHO05D001239 3.9e-12 74.7 60 65.0
Oeu013812.1 Olea europaea HOM05D001338 ORTHO05D001239 3.9e-12 74.7 60 65.0
Oeu022366.1 Olea europaea HOM05D001338 ORTHO05D001239 3.9e-12 74.7 60 65.0
Oeu023400.1 Olea europaea HOM05D001338 ORTHO05D001239 3.9e-12 74.7 60 65.0
Oeu031022.1 Olea europaea HOM05D001338 ORTHO05D001239 3.9e-12 74.7 60 65.0
Oeu045512.1 Olea europaea HOM05D001338 ORTHO05D001239 3.9e-12 74.7 60 65.0
Oeu057765.1 Olea europaea HOM05D001338 ORTHO05D001239 3.9e-12 74.7 60 65.0
PSO384G1406 Papaver somniferum HOM05D001338 ORTHO05D001239 3.9e-12 74.7 58 65.5
AT2G06500 Arabidopsis thaliana HOM05D001338 ORTHO05D001239 5.1e-12 74.3 55 67.3
FvH4_4g12942 Fragaria vesca HOM05D001338 ORTHO05D001239 6.6e-12 73.9 44 86.4
Oeu034185.1 Olea europaea HOM05D001338 ORTHO05D001239 6.6e-12 73.9 55 69.1
Oeu039916.1 Olea europaea HOM05D001338 ORTHO05D001239 6.6e-12 73.9 55 69.1
Oeu054194.1 Olea europaea HOM05D001338 ORTHO05D001239 6.6e-12 73.9 55 65.5
PSO675G4854 Papaver somniferum HOM05D001338 ORTHO05D001239 6.6e-12 73.9 58 63.8
CANSAT41G0002 Cannabis sativa HOM05D000027 ORTHO05D000066 8.7e-12 73.6 58 62.1
PSO724G1235 Papaver somniferum HOM05D001338 ORTHO05D001239 8.7e-12 73.6 60 60.0
TWI74G0618 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 8.7e-12 73.6 56 66.1
Aqoxy3G01371 Aquilegia oxysepala HOM05D001338 ORTHO05D001239 1.1e-11 73.2 60 60.0
Glyma.14G107400 Glycine max HOM05D001338 ORTHO05D001239 1.1e-11 73.2 56 62.5
Oeu012998.1 Olea europaea HOM05D001338 ORTHO05D001239 1.1e-11 73.2 60 63.3
Oeu020403.1 Olea europaea HOM05D001338 ORTHO05D001239 1.1e-11 73.2 60 63.3
Oeu039598.1 Olea europaea HOM05D001338 ORTHO05D001239 1.1e-11 73.2 60 63.3
PSO170G3017 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
PSO170G4086 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
PSO170G4602 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
PSO210G1168 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
PSO210G1814 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
PSO339G3296 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
PSO541G0488 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
PSO724G1135 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
PSO832G2505 Papaver somniferum HOM05D001338 ORTHO05D001239 1.1e-11 73.2 58 63.8
CSS0006616 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.5e-11 72.8 60 61.7
CSS0039736 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.5e-11 72.8 60 61.7
Oeu026292.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-11 72.8 60 61.7
Oeu034373.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-11 72.8 60 63.3
Oeu039971.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-11 72.8 60 61.7
Oeu051319.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-11 72.8 60 63.3
Oeu060590.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-11 72.8 60 61.7
AL1G56700 Arabidopsis lyrata HOM05D001338 ORTHO05D001239 1.9e-11 72.4 58 60.3
CARHR257270 Cardamine hirsuta HOM05D001338 ORTHO05D001239 1.9e-11 72.4 56 60.7
Oeu015894.1 Olea europaea HOM05D001338 ORTHO05D001239 1.9e-11 72.4 55 69.1
Oeu034372.1 Olea europaea HOM05D001338 ORTHO05D001239 1.9e-11 72.4 60 63.3
EL10Ac7g17250 Beta vulgaris HOM05D001338 ORTHO05D001239 2.5e-11 72.0 55 65.5
Oeu001068.1 Olea europaea HOM05D001338 ORTHO05D001239 2.5e-11 72.0 60 63.3
Oeu026150.1 Olea europaea HOM05D001338 ORTHO05D001239 2.5e-11 72.0 60 63.3
Oeu043525.1 Olea europaea HOM05D001338 ORTHO05D001239 2.5e-11 72.0 60 61.7
Oeu052558.1 Olea europaea HOM05D001338 ORTHO05D001239 2.5e-11 72.0 60 61.7
PSO170G3462 Papaver somniferum HOM05D001338 ORTHO05D001239 2.5e-11 72.0 58 63.8
RcHm_v2.0_Chr4g0431861 Rosa chinensis HOM05D001338 ORTHO05D001239 2.5e-11 72.0 65 55.4
EL10Ac9g22457 Beta vulgaris HOM05D001338 ORTHO05D001239 3.3e-11 71.6 54 63.0
CANSAT11G1935 Cannabis sativa HOM05D001338 ORTHO05D001239 3.3e-11 71.6 58 58.6
Oeu012605.1 Olea europaea HOM05D001338 ORTHO05D001239 3.3e-11 71.6 55 61.8
Oeu023192.1 Olea europaea HOM05D001338 ORTHO05D001239 3.3e-11 71.6 60 61.7
TWI18G1324 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 3.3e-11 71.6 60 60.0
EL10Ac3g06627 Beta vulgaris HOM05D001338 ORTHO05D001239 4.3e-11 71.2 73 52.1
BcaB01g01626 Brassica carinata HOM05D001338 ORTHO05D001239 4.3e-11 71.2 55 63.6
Oeu002839.1 Olea europaea HOM05D001338 ORTHO05D001239 4.3e-11 71.2 60 61.7
Oeu017832.1 Olea europaea HOM05D001338 ORTHO05D001239 4.3e-11 71.2 60 63.3
Oeu028399.1 Olea europaea HOM05D001338 ORTHO05D001239 4.3e-11 71.2 60 63.3
Oeu032717.1 Olea europaea HOM05D001338 ORTHO05D001239 4.3e-11 71.2 60 61.7
Oeu028129.1 Olea europaea HOM05D001338 ORTHO05D001239 5.6e-11 70.9 60 63.3
Oeu045638.1 Olea europaea HOM05D001338 ORTHO05D001239 5.6e-11 70.9 60 61.7
PSO017G0847 Papaver somniferum HOM05D001338 ORTHO05D001239 5.6e-11 70.9 60 56.7
RcHm_v2.0_Chr3g0480551 Rosa chinensis HOM05D001338 ORTHO05D001239 5.6e-11 70.9 60 63.3
RcHm_v2.0_Chr4g0435271 Rosa chinensis HOM05D001338 ORTHO05D001239 5.6e-11 70.9 60 63.3
CARHR256860 Cardamine hirsuta HOM05D001338 ORTHO05D001239 7.3e-11 70.5 50 70.0
Oeu019879.2 Olea europaea HOM05D001338 ORTHO05D001239 7.3e-11 70.5 60 61.7
Oeu044267.1 Olea europaea HOM05D001338 ORTHO05D001239 7.3e-11 70.5 60 63.3
CSS0005716 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 9.6e-11 70.1 60 58.3
FvH4_2g18762 Fragaria vesca HOM05D001338 ORTHO05D001239 9.6e-11 70.1 60 58.3
Oeu039478.1 Olea europaea HOM05D001338 ORTHO05D001239 9.6e-11 70.1 55 65.5
Gorai.010G072400 Gossypium raimondii HOM05D001338 ORTHO05D001239 1.3e-10 69.7 62 54.8
HanXRQChr03g0070731 Helianthus annuus HOM05D001338 ORTHO05D001239 1.3e-10 69.7 55 61.8
Oeu029248.1 Olea europaea HOM05D001338 ORTHO05D001239 1.3e-10 69.7 60 60.0
Oeu034167.1 Olea europaea HOM05D001338 ORTHO05D001239 1.3e-10 69.7 60 60.0
Oeu034648.1 Olea europaea HOM05D001338 ORTHO05D001239 1.3e-10 69.7 55 60.0
Oeu035515.1 Olea europaea HOM05D001338 ORTHO05D001239 1.3e-10 69.7 60 61.7
BolC1t04120H Brassica oleracea HOM05D001338 ORTHO05D001239 1.6e-10 69.3 55 58.2
PSO339G3643 Papaver somniferum HOM05D001338 ORTHO05D001239 1.6e-10 69.3 50 70.0
HanXRQChr10g0286761 Helianthus annuus HOM05D001338 ORTHO05D001239 2.1e-10 68.9 55 58.2
Oeu019018.1 Olea europaea HOM05D001338 ORTHO05D001239 2.1e-10 68.9 60 60.0
RcHm_v2.0_Chr1g0320361 Rosa chinensis HOM05D001338 ORTHO05D001239 2.1e-10 68.9 60 58.3
RcHm_v2.0_Chr1g0377611 Rosa chinensis HOM05D001338 ORTHO05D001239 2.1e-10 68.9 60 58.3
RcHm_v2.0_Chr2g0172511 Rosa chinensis HOM05D001338 ORTHO05D001239 2.1e-10 68.9 60 58.3
RcHm_v2.0_Chr6g0288531 Rosa chinensis HOM05D001338 ORTHO05D001239 2.1e-10 68.9 60 58.3
RcHm_v2.0_Chr7g0233981 Rosa chinensis HOM05D001338 ORTHO05D001239 2.1e-10 68.9 60 58.3
Oeu054316.1 Olea europaea HOM05D001338 ORTHO05D001239 2.8e-10 68.6 54 63.0
Oeu063768.1 Olea europaea HOM05D001338 ORTHO05D001239 2.8e-10 68.6 54 61.1
RcHm_v2.0_Chr2g0106921 Rosa chinensis HOM05D001338 ORTHO05D001239 2.8e-10 68.6 59 57.6
CARHR128520 Cardamine hirsuta HOM05D001338 ORTHO05D001239 3.6e-10 68.2 54 61.1
PSO170G4402 Papaver somniferum HOM05D001338 ORTHO05D001239 3.6e-10 68.2 58 55.2
PSO541G2437 Papaver somniferum HOM05D001338 ORTHO05D001239 3.6e-10 68.2 61 60.7
CiPaw.15G122600 Carya illinoinensis HOM05D001338 ORTHO05D001239 4.8e-10 67.8 55 60.0
RcHm_v2.0_Chr5g0031951 Rosa chinensis HOM05D001338 ORTHO05D001239 4.8e-10 67.8 60 61.7
CANSAT80G1592 Cannabis sativa HOM05D001338 ORTHO05D001239 6.2e-10 67.4 60 56.7
Thhalv10009558m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 6.2e-10 67.4 59 54.2
Thhalv10009736m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 6.2e-10 67.4 59 54.2
Oeu022714.1 Olea europaea HOM05D001338 ORTHO05D001239 6.2e-10 67.4 60 58.3
Atru.chr12.2101 Acer truncatum HOM05D001338 ORTHO05D001239 8.1e-10 67.0 55 60.0
PSO761G0174 Papaver somniferum HOM05D001338 ORTHO05D001239 8.1e-10 67.0 60 55.0
AT4G10200 Arabidopsis thaliana HOM05D001338 ORTHO05D001239 1.1e-09 66.6 58 55.2
RcHm_v2.0_Chr1g0321921 Rosa chinensis HOM05D001338 ORTHO05D001239 1.1e-09 66.6 60 60.0
CANSAT64G0482 Cannabis sativa HOM05D001338 ORTHO05D001239 1.4e-09 66.2 60 55.0
Sp5g13100 Schrenkiella parvula HOM05D001338 ORTHO05D001239 1.4e-09 66.2 55 54.5
CANSAT01G1407 Cannabis sativa HOM05D001338 ORTHO05D001239 1.8e-09 65.9 60 56.7
HanXRQChr11g0321031 Helianthus annuus HOM05D001338 ORTHO05D001239 1.8e-09 65.9 55 60.0
Oeu027891.1 Olea europaea HOM05D001338 ORTHO05D001239 1.8e-09 65.9 60 58.3
PSO063G4296 Papaver somniferum HOM05D001338 ORTHO05D001239 1.8e-09 65.9 55 60.0
PSO170G2392 Papaver somniferum HOM05D001338 ORTHO05D001239 1.8e-09 65.9 60 53.3
PSO724G0816 Papaver somniferum HOM05D001338 ORTHO05D001239 1.8e-09 65.9 60 56.7
Oeu016367.1 Olea europaea HOM05D001338 ORTHO05D001239 3.1e-09 65.1 54 59.3
SpUn0060_0030 Schrenkiella parvula HOM05D001338 ORTHO05D001239 3.1e-09 65.1 58 55.2
CANSAT35G0841 Cannabis sativa HOM05D001338 ORTHO05D001239 4.0e-09 64.7 60 55.0
PSO339G5336 Papaver somniferum HOM05D001338 ORTHO05D001239 4.0e-09 64.7 60 55.0
PSO541G1789 Papaver somniferum HOM05D001338 ORTHO05D001239 4.0e-09 64.7 55 56.4
PSO339G2135 Papaver somniferum HOM05D001338 ORTHO05D001239 5.3e-09 64.3 52 61.5
PSO017G5137 Papaver somniferum HOM05D001338 ORTHO05D001239 6.9e-09 63.9 55 60.0
PSO063G6596 Papaver somniferum HOM05D001338 ORTHO05D001239 6.9e-09 63.9 55 60.0
CANSAT80G1687 Cannabis sativa HOM05D001338 ORTHO05D001239 1.2e-08 63.2 60 53.3
PSO063G6488 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-08 63.2 60 53.3
PSO063G7197 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-08 63.2 60 53.3
PSO138G0008 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-08 63.2 58 53.4
PSO138G0009 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-08 63.2 58 53.4
PSO478G1760 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-08 63.2 60 53.3
PSO832G0537 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-08 63.2 60 53.3
Sp3g17010 Schrenkiella parvula HOM05D001338 ORTHO05D001239 1.2e-08 63.2 54 55.6
EL10Ac1g02359 Beta vulgaris HOM05D001338 ORTHO05D001239 1.5e-08 62.8 77 44.2
PSO144G0154 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-08 62.8 55 54.5
FAN26G1011 Fragaria x ananassa HOM05D050255 ORTHO05D046582 2.0e-08 62.4 36 83.3
TWI31G1167 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 2.6e-08 62.0 50 58.0
Oeu000170.1 Olea europaea HOM05D001338 ORTHO05D001239 3.4e-08 61.6 42 73.8
PSO339G3227 Papaver somniferum HOM05D001338 ORTHO05D001239 3.4e-08 61.6 55 58.2
PSO801G0075 Papaver somniferum HOM05D001338 ORTHO05D001239 3.4e-08 61.6 47 66.0
C09p32850 Brassica napus HOM05D001338 ORTHO05D001239 4.4e-08 61.2 58 55.2
Sp3g26320 Schrenkiella parvula HOM05D001338 ORTHO05D001239 4.4e-08 61.2 56 51.8
PSO764G0071 Papaver somniferum HOM05D001338 ORTHO05D001239 5.8e-08 60.8 60 51.7
PSO063G6584 Papaver somniferum HOM05D001338 ORTHO05D001239 7.6e-08 60.5 60 51.7
Oeu057453.1 Olea europaea HOM05D001338 ORTHO05D001239 1.3e-07 59.7 50 60.0
CARHR178380 Cardamine hirsuta HOM05D001338 ORTHO05D001239 1.7e-07 59.3 40 72.5
TWI31G0800 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 1.7e-07 59.3 40 70.0
Oeu049829.1 Olea europaea HOM05D001338 ORTHO05D001239 2.2e-07 58.9 39 74.4
CARHR116070 Cardamine hirsuta HOM05D001338 ORTHO05D001239 2.9e-07 58.5 40 70.0
Oeu052286.1 Olea europaea HOM05D001338 ORTHO05D001239 4.9e-07 57.8 37 78.4
AUR62037832 Chenopodium quinoa HOM05D001338 ORTHO05D001239 8.4e-07 57.0 42 64.3
TWI74G0662 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 1.1e-06 56.6 40 65.0
TWI74G1243 Tripterygium wilfordii HOM05D000044 ORTHO05D000051 1.1e-06 56.6 40 65.0
Oeu025048.1 Olea europaea HOM05D001338 ORTHO05D001239 2.4e-06 55.5 42 64.3
PSO339G5254 Papaver somniferum HOM05D001338 ORTHO05D001239 2.4e-06 55.5 59 50.8
Atru.chr1.2150 Acer truncatum HOM05D002861 ORTHO05D003104 4.2e-06 54.7 67 49.3
CANSAT01G0302 Cannabis sativa HOM05D001338 ORTHO05D001239 5.4e-06 54.3 42 64.3
CARHR098000 Cardamine hirsuta HOM05D001338 ORTHO05D001239 7.1e-06 53.9 47 51.1
FvH4_1g10851 Fragaria vesca HOM05D001338 ORTHO05D001239 7.1e-06 53.9 52 48.1
CARHR293480 Cardamine hirsuta HOM05D001338 ORTHO05D001239 9.3e-06 53.5 40 67.5


User provided reference genes

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