Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 2.0e-186 655.6 322 100.0
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.1e-143 512.7 320 81.2
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.3e-142 510.0 325 80.6
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.3e-141 505.4 320 80.6
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 3.4e-122 442.2 326 71.5
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.0e-121 440.7 331 68.6
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 5.5e-120 434.9 326 70.9
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 3.3e-117 425.6 328 67.7
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 7.4e-117 424.5 325 68.9
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.3e-116 423.7 323 67.5
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.8e-116 421.8 332 66.3
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.2e-114 417.2 331 63.4
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.0e-114 416.4 329 66.6
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.6e-114 416.0 321 66.7
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.9e-114 414.8 319 68.3
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 5.9e-114 414.8 327 66.7
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.0e-113 414.1 253 79.1
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 2.2e-113 412.9 328 68.3
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 8.5e-113 411.0 325 68.3
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.9e-112 409.8 327 63.3
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.2e-112 408.7 333 63.4
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 9.4e-112 407.5 324 65.4
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.7e-110 401.4 321 64.8
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.1e-109 400.6 321 65.1
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.5e-109 400.2 257 77.4
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.4e-109 397.9 328 64.6
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 4.1e-107 392.1 319 63.9
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.0e-106 389.8 289 69.2
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.4e-106 389.0 328 61.9
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 4.5e-106 388.7 329 61.7
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 7.7e-106 387.9 332 64.5
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.0e-105 385.2 310 66.5
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-104 384.0 310 66.1
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 5.5e-104 381.7 301 67.1
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 7.2e-104 381.3 330 60.9
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 9.4e-104 380.9 318 64.5
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-103 380.6 332 59.9
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.1e-103 379.8 332 59.0
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 2.7e-103 379.4 313 64.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.6e-103 379.0 310 65.2
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.7e-103 378.6 313 64.5
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.9e-103 377.9 332 59.0
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 7.9e-103 377.9 276 68.1
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 6.7e-102 374.8 330 60.0
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 8.8e-102 374.4 332 59.0
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 3.3e-101 372.5 326 59.8
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.7e-101 371.7 328 59.8
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 9.7e-101 370.9 323 60.7
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.3e-100 370.5 327 58.4
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.7e-100 370.2 332 59.0
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 3.7e-100 369.0 328 59.5
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.2e-100 367.9 326 59.8
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.4e-99 367.1 326 61.3
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.4e-99 367.1 325 60.6
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.4e-99 367.1 330 59.4
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.4e-99 367.1 318 60.4
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 4.1e-99 365.5 319 61.4
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 5.3e-99 365.2 324 60.5
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.6e-98 363.6 328 57.3
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 2.0e-98 363.2 328 59.1
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 2.0e-98 363.2 313 62.9
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.6e-98 362.8 328 57.6
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.6e-98 362.8 310 61.6
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 2.6e-98 362.8 337 58.2
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.0e-97 360.9 317 59.6
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 2.2e-97 359.8 230 78.3
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.2e-97 359.8 302 62.6
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.0e-97 358.6 323 59.1
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 5.0e-97 358.6 328 58.5
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.1e-96 357.5 301 60.5
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 3.2e-96 355.9 319 58.0
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 3.2e-96 355.9 330 57.0
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 5.5e-96 355.1 311 58.8
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 5.5e-96 355.1 331 57.1
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.6e-95 353.6 330 54.5
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 2.1e-95 353.2 323 58.5
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 2.7e-95 352.8 326 57.4
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 2.7e-95 352.8 257 68.5
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.8e-94 350.1 270 68.9
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.8e-94 350.1 270 68.9
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 3.0e-94 349.4 299 59.5
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 3.0e-94 349.4 333 55.3
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.5e-93 347.1 324 56.8
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 2.6e-93 346.3 321 57.3
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 3.3e-93 345.9 327 57.2
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 4.4e-93 345.5 303 58.4
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 9.7e-93 344.4 300 58.0
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 9.7e-93 344.4 300 58.0
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 9.7e-93 344.4 303 57.4
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.3e-92 344.0 329 56.2
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.8e-92 342.8 332 53.6
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 4.8e-92 342.0 302 62.3
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 6.3e-92 341.7 328 54.9
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 8.2e-92 341.3 300 57.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.1e-91 340.9 316 56.3
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.4e-91 340.5 275 63.6
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-91 340.5 328 54.9
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-91 340.5 328 54.9
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.8e-91 340.1 328 54.6
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 3.1e-91 339.3 353 56.4
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 5.3e-91 338.6 298 57.7
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 7.0e-91 338.2 291 61.9
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.1e-91 337.8 329 52.0
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.2e-90 337.4 328 54.3
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-90 337.0 328 53.7
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.0e-90 336.7 329 54.1
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 3.5e-90 335.9 316 56.0
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.9e-90 335.1 329 51.7
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 5.9e-90 335.1 323 53.3
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 7.7e-90 334.7 274 64.2
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.2e-89 333.2 329 51.7
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.9e-89 332.8 305 57.4
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.0e-89 332.0 326 55.2
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-88 330.9 353 51.6
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.2e-88 329.3 347 53.3
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.2e-87 327.4 342 53.5
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 2.1e-87 326.6 257 64.2
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.0e-85 320.1 258 61.6
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.4e-85 319.3 253 63.2
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 1.3e-84 317.4 321 53.9
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.3e-84 317.4 319 52.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 1.7e-84 317.0 321 51.4
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.7e-84 317.0 319 53.0
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 4.8e-84 315.5 312 53.2
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.8e-83 313.5 319 52.4
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.2e-82 310.8 311 52.7
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.0e-82 310.1 324 51.2
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 2.0e-82 310.1 319 53.6
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 4.5e-82 308.9 262 57.6
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 4.5e-82 308.9 326 51.2
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.0e-81 307.8 322 50.6
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 1.7e-81 307.0 328 50.0
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.7e-81 307.0 330 50.3
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 3.8e-81 305.8 258 60.9
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.5e-81 305.1 334 50.9
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.5e-80 302.0 280 55.7
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 9.4e-80 301.2 257 61.1
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 2.7e-79 299.7 279 55.2
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.1e-79 298.5 301 53.5
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 6.1e-79 298.5 308 50.0
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 8.0e-79 298.1 319 50.5
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 4.0e-78 295.8 265 55.5
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 4.0e-78 295.8 253 54.9
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 5.2e-78 295.4 326 49.4
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 2.0e-77 293.5 305 52.1
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.0e-77 293.5 294 54.4
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.4e-77 292.4 304 49.3
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.7e-76 290.4 315 51.1
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 6.6e-73 278.5 244 57.0
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 3.0e-70 269.6 286 50.0
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.3e-68 264.2 288 48.6
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 3.2e-67 259.6 161 77.0
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.7e-65 253.8 240 58.3
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.4e-62 244.2 234 56.0
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 8.9e-62 241.5 160 71.2
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 3.9e-57 226.1 237 53.6
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 5.6e-56 222.2 179 58.1
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 9.5e-56 221.5 283 48.4
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.5e-56 221.5 153 75.2
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.8e-55 219.9 154 68.2
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 3.6e-55 219.5 213 52.6
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 6.8e-54 215.3 240 50.0
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.2e-43 179.9 244 44.7
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 3.5e-42 176.4 201 49.3
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 4.0e-38 162.9 128 70.3
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 3.8e-36 156.4 263 36.1
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 2.4e-35 153.7 210 42.9
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 4.8e-31 139.4 87 77.0
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 5.1e-25 119.4 93 64.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.7e-25 118.6 81 70.4
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 4.8e-23 112.8 80 63.8
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 6.2e-23 112.5 122 46.7
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 8.1e-23 112.1 83 65.1
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 6.9e-22 109.0 80 67.5
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.2e-13 81.6 56 69.6


User provided reference genes

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