Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0136281 Rosa chinensis HOM05D006805 ORTHO05D008656 2.8e-38 161.4 77 100.0
RcHm_v2.0_Chr2g0100411 Rosa chinensis HOM05D006805 ORTHO05D008656 4.3e-15 84.3 42 97.6
FvH4_1g12510 Fragaria vesca HOM05D006805 ORTHO05D008656 1.4e-13 79.3 42 92.9
FAN19G2522 Fragaria x ananassa HOM05D006805 ORTHO05D008656 1.4e-13 79.3 42 92.9
FAN26G3258 Fragaria x ananassa HOM05D006805 ORTHO05D008656 1.4e-13 79.3 42 92.9
FAN23G0481 Fragaria x ananassa HOM05D006805 ORTHO05D008656 5.3e-13 77.4 42 90.5
Prupe.7G161800 Prunus persica HOM05D006805 ORTHO05D008656 2.0e-12 75.5 42 88.1
MD15G1252400 Malus domestica HOM05D006805 ORTHO05D008656 3.4e-12 74.7 48 79.2
arahy.Tifrunner.gnm1.ann1.CY3TH7 Arachis hypogaea HOM05D006805 ORTHO05D008656 1.0e-11 73.2 47 74.5
Duzib147G1209 Durio zibethinus HOM05D006805 ORTHO05D008656 1.0e-11 73.2 42 83.3
Thecc.01G027300 Theobroma cacao HOM05D006805 ORTHO05D008656 1.0e-11 73.2 42 83.3
Glyma.02G052900 Glycine max HOM05D006805 ORTHO05D008656 1.3e-11 72.8 42 83.3
Glyma.16G133100 Glycine max HOM05D006805 ORTHO05D008656 1.3e-11 72.8 42 83.3
arahy.Tifrunner.gnm1.ann1.P9L48X Arachis hypogaea HOM05D006805 ORTHO05D008656 1.7e-11 72.4 55 65.5
Lalb_Chr16g0391011 Lupinus albus HOM05D006805 ORTHO05D008656 1.7e-11 72.4 42 81.0
Phvul.003G257300 Phaseolus vulgaris HOM05D006805 ORTHO05D008656 1.7e-11 72.4 42 83.3
HanXRQChr14g0441241 Helianthus annuus HOM05D006805 ORTHO05D008656 5.0e-11 70.9 42 81.0
Lj4g0018076 Lotus japonicus HOM05D006805 ORTHO05D008656 5.0e-11 70.9 41 78.0
Medtr8g076840 Medicago truncatula HOM05D006805 ORTHO05D008656 5.0e-11 70.9 42 81.0
Sed0012409 Sechium edule HOM05D006805 ORTHO05D008656 5.0e-11 70.9 42 71.4
CAN.G358.30 Capsicum annuum HOM05D006805 ORTHO05D008656 6.5e-11 70.5 41 75.6
Ciclev10025725m.g Citrus clementina HOM05D006805 ORTHO05D008656 6.5e-11 70.5 45 77.8
Gohir.A02G167800 Gossypium hirsutum HOM05D006805 ORTHO05D008656 6.5e-11 70.5 41 78.0
Gorai.003G012500 Gossypium raimondii HOM05D006805 ORTHO05D008656 6.5e-11 70.5 41 78.0
VMungo0251G3732 Vigna mungo HOM05D006805 ORTHO05D008656 6.5e-11 70.5 42 81.0
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 8.5e-11 70.1 42 73.8
Hma1.2p1_0913F.1_g235930 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 8.5e-11 70.1 42 78.6
Hma1.2p1_0913F.1_g235940 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 8.5e-11 70.1 42 78.6
Solyc02g084810.3 Solanum lycopersicum HOM05D006805 ORTHO05D008656 8.5e-11 70.1 41 75.6
Sopen02g029480 Solanum pennellii HOM05D006805 ORTHO05D008656 8.5e-11 70.1 41 75.6
DCAR_025973 Daucus carota HOM05D006805 ORTHO05D008656 1.1e-10 69.7 42 76.2
CSS0042312 Camellia sinensis var. sinensis HOM05D006805 ORTHO05D008656 1.4e-10 69.3 42 76.2
CANSAT01G1867 Cannabis sativa HOM05D006805 ORTHO05D008656 1.9e-10 68.9 42 78.6
COL.COLO4_22005 Corchorus olitorius HOM05D006805 ORTHO05D008656 1.9e-10 68.9 42 78.6
Dinv40030 Davidia involucrata HOM05D006805 ORTHO05D008656 1.9e-10 68.9 42 76.2
TWI73G0963 Tripterygium wilfordii HOM05D006805 ORTHO05D008656 1.9e-10 68.9 42 81.0
arahy.Tifrunner.gnm1.ann1.FKKR7E Arachis hypogaea HOM05D006805 ORTHO05D008656 2.5e-10 68.6 42 76.2
GSVIVG01018866001 Vitis vinifera HOM05D006805 ORTHO05D008656 2.5e-10 68.6 42 73.8
Gohir.D03G012200 Gossypium hirsutum HOM05D006805 ORTHO05D008656 3.2e-10 68.2 41 75.6
Nn1g05800 Nelumbo nucifera HOM05D006805 ORTHO05D008656 3.2e-10 68.2 42 73.8
Peaxi162Scf00418g00926 Petunia axillaris HOM05D006805 ORTHO05D008656 3.2e-10 68.2 40 75.0
Cfa006913 Carpinus fangiana HOM05D006805 ORTHO05D008656 4.2e-10 67.8 42 78.6
Haze_03843 Corylus avellana HOM05D006805 ORTHO05D008656 4.2e-10 67.8 42 78.6
Thhalv10025347m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 4.2e-10 67.8 42 73.8
Psat4g096160 Pisum sativum HOM05D006805 ORTHO05D008656 4.2e-10 67.8 42 73.8
Nitab4.5_0000723g0180 Nicotiana tabacum HOM05D006805 ORTHO05D008656 5.5e-10 67.4 40 75.0
TPR.G21539 Trifolium pratense HOM05D000894 ORTHO05D001833 5.5e-10 67.4 42 73.8
CiPaw.08G138000 Carya illinoinensis HOM05D006805 ORTHO05D008656 7.2e-10 67.0 42 81.0
MELO3C007867.2 Cucumis melo HOM05D006805 ORTHO05D008656 7.2e-10 67.0 42 69.0
CsaV3_6G046700 Cucumis sativus L. HOM05D006805 ORTHO05D008656 7.2e-10 67.0 42 69.0
ECA238G0382 Erigeron canadensis HOM05D006805 ORTHO05D008656 7.2e-10 67.0 42 76.2
Atru.chr3.728 Acer truncatum HOM05D006805 ORTHO05D008656 9.4e-10 66.6 41 78.0
AL7G14650 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 1.6e-09 65.9 41 73.2
vmacro17722 Vaccinium macrocarpon HOM05D006805 ORTHO05D008656 1.6e-09 65.9 41 73.2
Carub.0007s0387 Capsella rubella HOM05D006805 ORTHO05D008656 2.1e-09 65.5 42 71.4
CARHR244770 Cardamine hirsuta HOM05D006805 ORTHO05D008656 2.1e-09 65.5 42 71.4
Duzib264G1030 Durio zibethinus HOM05D006805 ORTHO05D008656 2.1e-09 65.5 46 73.9
TAR381G0553 Trochodendron aralioides HOM05D006805 ORTHO05D008656 2.7e-09 65.1 42 73.8
MSTRG.2490 Avicennia marina HOM05D006805 ORTHO05D008656 3.6e-09 64.7 42 71.4
Cpa.g.sc6.179 Carica papaya HOM05D006805 ORTHO05D008656 3.6e-09 64.7 43 67.4
Cc07_g10060 Coffea canephora HOM05D006805 ORTHO05D008656 3.6e-09 64.7 42 71.4
AUR62004104 Chenopodium quinoa HOM05D006805 ORTHO05D008656 4.6e-09 64.3 42 66.7
Lj4C209T2 Lonicera japonica HOM05D006805 ORTHO05D008656 4.6e-09 64.3 42 69.0
Nitab4.5_0004708g0010 Nicotiana tabacum HOM05D006805 ORTHO05D008656 4.6e-09 64.3 41 70.7
Rhsim08G0122900 Rhododendron simsii HOM05D006805 ORTHO05D008656 4.6e-09 64.3 42 69.0
AT4G36440 Arabidopsis thaliana HOM05D006805 ORTHO05D008656 6.1e-09 63.9 42 69.0
AUR62007618 Chenopodium quinoa HOM05D006805 ORTHO05D008656 6.1e-09 63.9 42 66.7
THA.LOC104804245 Tarenaya hassleriana HOM05D006805 ORTHO05D008656 6.1e-09 63.9 42 66.7
BcaNung05308 Brassica carinata HOM05D000394 ORTHO05D000299 7.9e-09 63.5 41 70.7
QL06p035053 Quercus lobata HOM05D006805 ORTHO05D008656 7.9e-09 63.5 42 73.8
Sp7g34100 Schrenkiella parvula HOM05D006805 ORTHO05D008656 7.9e-09 63.5 47 63.8
CDE06G0805 Ceratophyllum demersum HOM05D006805 ORTHO05D008656 1.0e-08 63.2 40 70.0
Thhalv10000178m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 1.0e-08 63.2 41 68.3
Hma1.2p1_2955F.1_g330740 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 1.0e-08 63.2 35 80.0
PSO731G0058 Papaver somniferum HOM05D006805 ORTHO05D008656 1.4e-08 62.8 42 66.7
Potri.007G019400 Populus trichocarpa HOM05D006805 ORTHO05D008656 1.4e-08 62.8 42 73.8
Sc03g0003190 Simmondsia chinensis HOM05D006805 ORTHO05D008656 1.4e-08 62.8 42 69.0
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.4e-08 62.8 42 69.0
Manes.01G140000 Manihot esculenta HOM05D006805 ORTHO05D008656 1.8e-08 62.4 42 73.8
Aqoxy5G01548 Aquilegia oxysepala HOM05D006805 ORTHO05D008656 2.3e-08 62.0 42 69.0
BcaNung00732 Brassica carinata HOM05D006805 ORTHO05D008656 2.3e-08 62.0 41 68.3
C01p02610 Brassica napus HOM05D006805 ORTHO05D008656 2.3e-08 62.0 41 68.3
BolC1t00250H Brassica oleracea HOM05D006805 ORTHO05D008656 2.3e-08 62.0 41 68.3
BraA01t00229Z Brassica rapa HOM05D006805 ORTHO05D008656 2.3e-08 62.0 41 68.3
HPP92_008328 Vanilla planifolia HOM05D006805 ORTHO05D008656 2.3e-08 62.0 41 68.3
A01p02400 Brassica napus HOM05D000394 ORTHO05D008656 3.0e-08 61.6 41 65.9
unitig_61.g26353 Utricularia gibba HOM05D006805 ORTHO05D008656 5.1e-08 60.8 41 63.4
Sabra07G0016600 Salix brachista HOM05D006805 ORTHO05D008656 6.7e-08 60.5 42 69.0
Hund16454 Selenicereus undatus HOM05D006805 ORTHO05D008656 8.8e-08 60.1 42 64.3
Migut.H02510 Erythranthe guttata HOM05D006805 ORTHO05D008656 2.6e-07 58.5 41 63.4
ATR1154G040 Amborella trichopoda HOM05D006805 ORTHO05D008656 4.4e-07 57.8 48 52.1
Eucgr.J02381 Eucalyptus grandis HOM05D006805 ORTHO05D008656 1.3e-06 56.2 41 61.0
SGA_v2.0_scaffold51G18803 Striga asiatica HOM05D006805 ORTHO05D008656 1.3e-06 56.2 41 63.4
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 1.3e-06 56.2 41 63.4
SalBow8G5631 Salvia bowleyana HOM05D006805 ORTHO05D008656 2.2e-06 55.5 41 63.4
PGR102G0609 Punica granatum HOM05D006805 ORTHO05D008656 6.3e-06 53.9 41 61.0


User provided reference genes

Program Settings