Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1218.0 620 100.0
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 9.9e-227 790.4 598 72.4
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.7e-210 736.5 615 66.3
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.9e-210 735.7 615 66.3
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.0e-207 727.2 615 65.9
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 1.6e-205 719.9 635 64.3
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.4e-204 716.1 652 62.7
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 5.3e-172 608.6 606 57.1
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 2.6e-171 606.3 606 56.8
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 4.7e-144 515.8 616 50.5
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.8e-127 460.7 638 44.2
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 1.9e-124 450.7 610 45.4
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 1.6e-123 447.6 613 45.2
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.6e-123 446.0 613 43.9
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 6.0e-123 445.7 581 45.6
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 1.3e-122 444.5 613 45.0
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 8.6e-122 441.8 619 42.8
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 9.5e-121 438.3 596 44.5
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.2e-120 438.0 613 42.9
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.1e-119 434.9 642 42.1
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 6.8e-119 432.2 606 42.7
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.5e-118 431.0 606 42.7
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 2.6e-118 430.3 609 42.9
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 7.6e-118 428.7 606 43.1
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 2.9e-117 426.8 614 41.5
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 8.4e-117 425.2 613 42.3
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 1.1e-116 424.9 614 42.5
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 2.7e-115 420.2 534 46.8
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 3.6e-112 409.8 620 41.6
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 2.4e-111 407.1 613 42.3
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 5.8e-110 402.5 611 41.4
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 1.9e-108 397.5 614 40.4
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 5.4e-108 396.0 628 41.2
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 7.8e-107 392.1 604 39.9
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 2.4e-103 380.6 637 38.0
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 6.9e-103 379.0 665 38.5
Cpa.g.sc83.36 Carica papaya HOM05D003115 ORTHO05D003595 4.0e-95 353.2 521 42.6
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 4.0e-95 353.2 605 37.9
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.2e-94 351.7 596 38.9
Hma1.2p1_0039F.1_g024560 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 1.7e-93 347.8 585 37.4
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 6.4e-93 345.9 621 36.6
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 1.1e-92 345.1 614 36.3
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.4e-92 344.7 605 37.0
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 1.4e-92 344.7 596 38.4
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 1.9e-92 344.4 587 37.0
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 1.9e-92 344.4 607 37.2
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 3.2e-92 343.6 630 35.6
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 7.1e-92 342.4 605 38.0
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 9.3e-92 342.0 624 37.3
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 2.1e-91 340.9 596 38.3
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 8.7e-90 335.5 589 36.2
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 1.4e-87 328.2 517 40.4
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 2.4e-87 327.4 620 35.3
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 3.1e-87 327.0 715 33.1
Oeu043445.1 Olea europaea HOM05D003115 ORTHO05D003595 6.9e-87 325.9 527 38.5
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 4.5e-86 323.2 615 36.7
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 1.0e-85 322.0 442 44.1
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 3.2e-84 317.0 531 36.5
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 7.1e-84 315.8 618 35.1
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 9.3e-84 315.5 530 38.1
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 9.3e-84 315.5 683 33.1
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.3e-82 311.6 529 38.0
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 8.7e-82 308.9 642 34.9
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 3.3e-81 307.0 625 35.0
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 8.2e-80 302.4 725 31.7
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 1.1e-79 302.0 471 41.4
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 1.8e-79 301.2 587 32.5
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 2.4e-79 300.8 577 33.6
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 7.6e-78 295.8 585 33.0
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 1.0e-77 295.4 638 32.9
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 3.8e-77 293.5 699 32.5
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.4e-76 291.6 635 32.8
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 1.9e-76 291.2 653 30.3
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 1.8e-74 284.6 624 33.0
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 2.3e-74 284.3 624 33.2
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 3.3e-73 280.4 600 33.0
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 4.3e-73 280.0 726 30.0
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 2.0e-70 271.2 584 32.0
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 4.5e-70 270.0 600 30.5
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 2.9e-69 267.3 609 31.9
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.6e-67 260.4 573 32.6
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 3.9e-66 256.9 659 30.3
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 3.9e-66 256.9 606 31.2
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.7e-66 256.1 607 30.0
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 8.8e-66 255.8 592 32.3
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 1.1e-65 255.4 542 33.6
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 2.0e-65 254.6 607 32.1
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.4e-63 247.7 655 30.1
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 5.3e-63 246.5 600 31.5
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 1.4e-60 238.4 605 30.7
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 2.5e-60 237.7 558 31.7
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 2.5e-60 237.7 606 29.5
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 4.2e-60 236.9 595 31.4
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 7.2e-60 236.1 582 30.8
CDE07G0754 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 4.7e-59 233.4 582 31.1
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.0e-58 232.3 605 30.9
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 5.0e-53 213.4 599 34.1
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 9.4e-52 209.1 599 29.5
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 8.0e-51 206.1 597 29.1
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 1.2e-49 202.2 591 28.9
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 2.0e-49 201.4 600 29.5
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 2.2e-48 198.0 602 28.9
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.8e-48 197.6 586 28.3
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 7.2e-44 183.0 574 29.4
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.2e-43 182.2 335 34.6
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.3e-40 172.2 561 27.6
SEGI_06154 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 9.1e-39 166.0 496 27.2
CiPaw.14G076400 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.2e-35 155.6 302 36.1
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 4.5e-30 137.1 198 40.4
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 4.3e-28 130.6 566 25.1
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 2.4e-23 114.8 657 22.5
CANSAT78G0886 Cannabis sativa HOM05D003115 ORTHO05D003595 2.1e-19 101.7 99 52.5
Zm00001eb092010 Zea mays HOM05D003115 ORTHO05D029342 6.8e-18 96.7 155 38.7
Zm00001eb154910 Zea mays HOM05D003115 ORTHO05D029342 6.8e-18 96.7 155 38.7
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 4.4e-17 94.0 331 27.8
RcHm_v2.0_Chr2g0155431 Rosa chinensis HOM05D003115 ORTHO05D003595 8.3e-16 89.7 64 71.9
BolC5t31100H Brassica oleracea HOM05D003115 ORTHO05D003595 4.1e-15 87.4 336 27.1
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 7.0e-15 86.7 525 20.8
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 3.5e-14 84.3 93 54.8
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 1.7e-13 82.0 82 58.5
RcHm_v2.0_Chr6g0271321 Rosa chinensis HOM05D000001 ORTHO05D010702 3.0e-13 81.3 72 62.5
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 1.1e-12 79.3 492 20.7
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 7.3e-12 76.6 92 48.9
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.7e-11 73.9 82 52.4
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.7e-11 73.9 82 52.4
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.7e-11 73.9 82 52.4
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 6.2e-11 73.6 89 46.1
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 2.3e-10 71.6 562 21.7
Actinidia30875 Actinidia chinensis HOM05D003115 ORTHO05D003595 4.0e-10 70.9 67 53.7
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 6.8e-10 70.1 233 30.5
Actinidia30876 Actinidia chinensis HOM05D003115 ORTHO05D003595 2.6e-09 68.2 63 47.6
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 6.4e-08 63.5 90 43.3
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 5.4e-07 60.5 82 41.5
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 1.6e-06 58.9 76 46.1
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.6e-06 58.9 59 45.8
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 2.1e-06 58.5 76 46.1
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 4.6e-06 57.4 76 43.4


User provided reference genes

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