Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 7.7e-42 173.3 83 100.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.4e-27 125.2 86 76.7
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 7.2e-24 113.6 88 67.0
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.2e-23 112.8 88 67.0
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.8e-22 109.0 70 72.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.3e-22 108.6 88 65.9
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 3.0e-22 108.2 85 61.2
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 4.0e-22 107.8 68 73.5
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 5.2e-22 107.5 68 73.5
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.1e-21 106.3 80 65.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.1e-21 106.3 81 63.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.1e-21 106.3 81 63.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.1e-21 106.3 84 63.1
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.5e-21 105.9 89 60.7
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 2.6e-21 105.1 83 62.7
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.3e-21 104.8 80 63.8
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 3.3e-21 104.8 88 60.2
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 3.3e-21 104.8 87 63.2
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 5.7e-21 104.0 70 67.1
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 7.5e-21 103.6 79 64.6
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 9.7e-21 103.2 70 65.7
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.3e-20 102.8 86 60.5
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.3e-20 102.8 70 67.1
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.3e-20 102.8 82 61.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.7e-20 102.4 82 61.0
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.2e-20 102.1 68 67.6
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 2.2e-20 102.1 82 62.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.8e-20 101.7 84 63.1
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 3.7e-20 101.3 70 68.6
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.7e-20 101.3 85 62.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 3.7e-20 101.3 70 64.3
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 3.7e-20 101.3 84 59.5
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 4.8e-20 100.9 70 64.3
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 4.8e-20 100.9 70 67.1
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 6.3e-20 100.5 85 62.4
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 6.3e-20 100.5 85 58.8
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 8.2e-20 100.1 70 65.7
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 8.2e-20 100.1 86 61.6
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.1e-19 99.8 84 61.9
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.1e-19 99.8 70 65.7
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.4e-19 99.4 84 60.7
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.8e-19 99.0 70 64.3
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.8e-19 99.0 84 60.7
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 2.4e-19 98.6 85 63.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.4e-19 98.6 70 62.9
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 2.4e-19 98.6 85 61.2
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 3.1e-19 98.2 79 60.8
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 3.1e-19 98.2 87 55.2
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 3.1e-19 98.2 82 58.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 9.1e-19 96.7 70 62.9
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 9.1e-19 96.7 68 63.2
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 9.1e-19 96.7 87 56.3
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 9.1e-19 96.7 86 55.8
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.6e-18 95.9 85 58.8
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.6e-18 95.9 84 61.9
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.0e-18 95.5 85 61.2
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-18 95.5 83 57.8
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-18 95.5 83 57.8
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 2.7e-18 95.1 85 61.2
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.7e-18 95.1 79 58.2
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 3.5e-18 94.7 70 61.4
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 4.5e-18 94.4 82 57.3
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 4.5e-18 94.4 82 57.3
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 5.9e-18 94.0 81 59.3
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 7.7e-18 93.6 84 57.1
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 7.7e-18 93.6 88 55.7
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 7.7e-18 93.6 84 54.8
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.0e-17 93.2 78 56.4
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.7e-17 92.4 83 55.4
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 3.8e-17 91.3 68 63.2
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 3.8e-17 91.3 70 62.9
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 6.5e-17 90.5 70 60.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 6.5e-17 90.5 91 56.0
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 6.5e-17 90.5 85 58.8
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 8.5e-17 90.1 78 59.0
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 8.5e-17 90.1 70 57.1
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 4.2e-16 87.8 81 50.6
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 2.7e-15 85.1 91 52.7
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 2.2e-12 75.5 128 39.1
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 3.5e-10 68.2 135 34.8
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.7e-09 65.9 39 71.8
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 2.9e-09 65.1 36 72.2
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 2.9e-09 65.1 37 73.0
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 3.8e-09 64.7 70 45.7
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.2e-07 59.7 39 61.5
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.7e-07 58.5 49 53.1
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 8.0e-07 57.0 36 66.7
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.3e-06 55.5 37 62.2
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 5.2e-06 54.3 52 63.5


User provided reference genes

Program Settings