Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.8e-157 558.5 279 100.0
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.5e-137 490.3 276 90.9
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.6e-136 489.6 280 90.0
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.6e-136 488.4 276 90.9
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.1e-132 476.9 300 83.7
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.4e-116 423.3 292 76.7
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 2.4e-116 422.5 285 76.1
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 9.0e-111 404.1 248 81.5
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.2e-107 393.7 276 73.6
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 2.3e-106 389.4 214 87.4
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 3.9e-106 388.7 263 74.1
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 8.7e-106 387.5 215 86.0
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.5e-105 386.0 273 71.8
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.3e-105 385.6 256 76.6
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 5.6e-105 384.8 232 81.0
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 9.6e-105 384.0 248 78.6
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 9.6e-105 384.0 247 76.9
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.6e-104 383.3 213 85.9
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.6e-104 383.3 264 74.2
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.6e-104 383.3 259 75.7
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.6e-104 383.3 267 74.2
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 2.8e-104 382.5 232 81.0
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.8e-104 382.5 220 83.6
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.8e-104 381.7 220 82.7
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 8.1e-104 380.9 216 82.4
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 8.1e-104 380.9 278 71.6
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 6.9e-103 377.9 229 80.8
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 9.0e-103 377.5 229 80.8
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.5e-102 376.7 228 80.7
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.0e-102 376.3 224 82.6
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 7.6e-102 374.4 267 71.2
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 3.8e-101 372.1 288 69.4
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.8e-101 372.1 227 79.7
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 6.4e-101 371.3 262 72.5
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 8.4e-101 370.9 283 68.6
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 3.2e-100 369.0 235 76.6
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 3.2e-100 369.0 235 76.6
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 4.2e-100 368.6 232 77.2
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 4.2e-100 368.6 232 77.2
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 7.1e-100 367.9 235 76.6
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 7.1e-100 367.9 273 68.9
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 9.3e-100 367.5 279 69.9
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 9.3e-100 367.5 212 83.0
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 9.3e-100 367.5 271 70.1
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 9.3e-100 367.5 232 77.2
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.7e-99 365.9 222 80.2
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 4.6e-99 365.2 220 81.4
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 4.6e-99 365.2 220 81.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 4.6e-99 365.2 220 81.4
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 4.6e-99 365.2 232 76.7
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 6.0e-99 364.8 220 80.9
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.0e-99 364.8 219 80.4
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 7.9e-99 364.4 218 80.7
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.3e-98 363.6 220 80.9
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-98 363.6 218 81.2
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 3.0e-98 362.5 279 69.2
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 3.0e-98 362.5 235 75.3
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 5.1e-98 361.7 214 82.7
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 8.7e-98 360.9 252 74.6
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.1e-97 360.5 220 80.5
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.5e-97 360.1 279 67.4
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.5e-97 359.4 235 76.6
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 2.5e-97 359.4 225 77.3
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 5.6e-97 358.2 224 76.8
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.6e-96 356.7 264 71.6
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 2.1e-96 356.3 260 71.9
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.1e-96 356.3 328 64.0
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.7e-96 355.5 262 69.5
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.7e-96 355.5 231 76.6
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 6.2e-96 354.8 225 76.0
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 8.1e-96 354.4 239 74.9
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-95 354.0 231 74.9
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-95 354.0 231 74.5
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.8e-95 353.2 219 78.1
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.8e-95 353.2 219 78.1
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.8e-95 353.2 231 76.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 5.3e-95 351.7 227 74.4
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.2e-94 350.5 245 71.4
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.2e-94 350.5 285 64.9
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.0e-94 349.7 232 76.3
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 3.4e-94 349.0 215 77.2
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 7.6e-94 347.8 216 78.7
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 7.6e-94 347.8 247 73.3
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.0e-93 347.4 237 74.3
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.7e-93 346.7 223 78.0
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-93 346.7 223 78.0
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.7e-93 346.7 233 73.8
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.7e-93 346.7 230 73.9
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 4.9e-93 345.1 223 77.6
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 6.5e-93 344.7 223 77.6
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 6.5e-93 344.7 273 66.3
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 8.4e-93 344.4 216 77.3
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.9e-92 343.2 230 73.5
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.9e-92 343.2 219 77.2
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.6e-91 340.1 223 76.7
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.1e-91 339.7 260 66.2
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.5e-91 339.0 230 72.2
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.0e-91 338.2 226 75.2
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 7.9e-91 337.8 223 76.2
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.3e-90 337.0 226 75.2
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.8e-90 336.7 227 72.7
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.8e-90 336.7 226 75.2
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.3e-90 336.3 233 72.1
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.1e-89 334.0 208 76.9
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.9e-89 333.2 216 75.0
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.3e-88 330.5 215 75.3
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.6e-88 330.1 225 71.1
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.6e-88 330.1 227 72.7
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.8e-88 329.3 214 76.2
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.7e-88 328.9 257 66.5
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.8e-88 328.6 281 64.1
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 6.3e-88 328.2 278 63.7
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.2e-88 327.8 239 69.9
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.2e-88 327.8 280 63.6
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 8.2e-88 327.8 271 64.2
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.1e-87 327.4 223 71.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 5.3e-87 325.1 218 73.9
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.2e-86 323.9 237 70.0
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.2e-86 323.9 271 63.8
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 2.0e-86 323.2 267 63.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 2.6e-86 322.8 186 82.8
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.2e-85 319.7 215 71.2
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 2.2e-85 319.7 230 69.1
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.0e-85 318.5 213 74.2
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 6.5e-85 318.2 212 72.2
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.4e-84 317.0 212 71.7
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.2e-84 315.8 229 69.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 9.3e-84 314.3 215 71.6
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.7e-83 312.8 229 69.0
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.3e-82 309.7 218 69.3
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.3e-82 309.7 274 60.9
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.3e-82 309.7 219 70.8
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 8.7e-82 307.8 218 68.3
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 8.7e-82 307.8 218 68.3
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.9e-81 306.6 218 67.9
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-81 306.6 218 67.9
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.9e-81 306.6 218 67.9
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 4.3e-81 305.4 213 71.8
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 3.1e-79 299.3 201 74.6
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 5.3e-79 298.5 177 82.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 2.0e-78 296.6 194 74.2
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.4e-78 295.8 227 67.0
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 3.1e-71 272.7 234 63.2
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 7.9e-67 258.1 199 65.8
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 9.7e-65 251.1 231 57.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 9.7e-65 251.1 218 60.1
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 8.2e-64 248.1 148 83.1
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.4e-63 246.5 235 58.3
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 2.4e-63 246.5 148 82.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 6.1e-59 231.9 202 59.9
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 1.0e-58 231.1 135 85.2
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.6e-54 217.2 218 53.7
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 3.8e-53 212.6 231 51.5
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.4e-47 192.2 255 43.9
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 6.8e-42 175.3 190 53.7
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.8e-39 167.2 181 50.3
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.4e-39 165.6 167 47.9
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.0e-29 134.8 89 77.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 4.0e-26 122.9 121 53.7
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.6e-17 93.6 63 66.7
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 4.3e-12 76.3 89 44.9
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.8e-10 70.9 68 50.0
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 6.8e-10 68.9 65 53.8
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.6e-09 67.0 81 49.4
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 4.4e-09 66.2 72 51.4
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.3e-08 64.7 44 70.5
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.4e-07 61.2 40 70.0


User provided reference genes

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