Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0135191 Rosa chinensis HOM05D000163 ORTHO05D000219 4.1e-47 191.0 97 100.0
FAN02G4346 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.1e-22 109.0 81 75.3
FAN05G4090 Fragaria x ananassa HOM05D000163 ORTHO05D000219 6.0e-22 107.5 81 75.3
FAN09G0654 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.0e-17 92.4 61 73.8
Prupe.3G088300 Prunus persica HOM05D000163 ORTHO05D000219 1.6e-11 72.8 64 59.4
RcHm_v2.0_Chr2g0134781 Rosa chinensis HOM05D000163 ORTHO05D000219 1.6e-11 72.8 59 66.1
FAN05G3429 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.8e-11 72.0 65 60.0
FvH4_6g29380 Fragaria vesca HOM05D000163 ORTHO05D000219 4.8e-11 71.2 65 58.5
FAN09G1192 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.8e-11 71.2 65 58.5
FAN14G1861 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.8e-11 71.2 65 58.5
MD17G1215300 Malus domestica HOM05D000163 ORTHO05D000219 3.1e-10 68.6 58 60.3
Ciclev10010281m.g Citrus clementina HOM05D000163 ORTHO05D000219 9.0e-10 67.0 63 54.0
FAN02G3948 Fragaria x ananassa HOM05D000163 ORTHO05D000219 1.2e-09 66.6 66 56.1
RcHm_v2.0_Chr1g0332091 Rosa chinensis HOM05D000163 ORTHO05D000219 1.2e-09 66.6 58 55.2
MD17G1212900 Malus domestica HOM05D000163 ORTHO05D000219 1.5e-09 66.2 58 60.3
FvH4_1g27800 Fragaria vesca HOM05D000163 ORTHO05D000219 4.5e-09 64.7 54 59.3
FAN01G0803 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.5e-09 64.7 66 54.5
FAN06G0739 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.5e-09 64.7 66 54.5
Thecc.09G196300 Theobroma cacao HOM05D000163 ORTHO05D000219 4.5e-09 64.7 46 65.2
CANSAT80G2232 Cannabis sativa HOM05D000163 ORTHO05D000219 5.9e-09 64.3 64 51.6
MBI16_g00845_MAGBIO Magnolia biondii HOM05D000163 ORTHO05D000219 5.9e-09 64.3 53 60.4
TWI34G1975 Tripterygium wilfordii HOM05D000163 ORTHO05D000219 5.9e-09 64.3 48 62.5
GSVIVG01032261001 Vitis vinifera HOM05D000163 ORTHO05D000219 1.7e-08 62.8 43 67.4
Gohir.A05G001000 Gossypium hirsutum HOM05D000163 ORTHO05D000219 3.8e-08 61.6 59 49.2
Atru.chr7.961 Acer truncatum HOM05D000163 ORTHO05D000219 5.0e-08 61.2 66 50.0
MD17G1224800 Malus domestica HOM05D000163 ORTHO05D000219 6.5e-08 60.8 53 52.8
Dinv12610 Davidia involucrata HOM05D000163 ORTHO05D000219 8.5e-08 60.5 40 70.0
MD13G1232900 Malus domestica HOM05D000163 ORTHO05D000219 8.5e-08 60.5 56 53.6
MD13G1233300 Malus domestica HOM05D000163 ORTHO05D000219 8.5e-08 60.5 56 53.6
PSO017G0773 Papaver somniferum HOM05D000163 ORTHO05D000219 8.5e-08 60.5 61 47.5
Prupe.1G064300 Prunus persica HOM05D000163 ORTHO05D000219 8.5e-08 60.5 56 55.4
Manes.10G000500 Manihot esculenta HOM05D000163 ORTHO05D000219 1.1e-07 60.1 48 58.3
PSO170G4854 Papaver somniferum HOM05D000163 ORTHO05D000219 1.4e-07 59.7 61 47.5
PGR142G0696 Punica granatum HOM05D000163 ORTHO05D000219 1.4e-07 59.7 56 57.1
Aa31sc132G90 Aethionema arabicum HOM05D000163 ORTHO05D000219 1.9e-07 59.3 53 56.6
Cfa020751 Carpinus fangiana HOM05D000163 ORTHO05D000219 1.9e-07 59.3 47 59.6
Duzib168G0858 Durio zibethinus HOM05D000163 ORTHO05D000219 1.9e-07 59.3 48 60.4
Prupe.2G073500 Prunus persica HOM05D000163 ORTHO05D000219 1.9e-07 59.3 55 54.5
TAR625G0541 Trochodendron aralioides HOM05D000163 ORTHO05D000219 1.9e-07 59.3 36 69.4
CiPaw.15G156600 Carya illinoinensis HOM05D000163 ORTHO05D000219 2.5e-07 58.9 48 54.2
FAN02G4271 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.5e-07 58.9 38 68.4
FAN05G0034 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.5e-07 58.9 38 68.4
Gohir.A05G115500 Gossypium hirsutum HOM05D000163 ORTHO05D000219 2.5e-07 58.9 38 65.8
Ah.10g032750 Amaranthus hybridus HOM05D000163 ORTHO05D000219 3.2e-07 58.5 46 60.9
FvH4_6g29580 Fragaria vesca HOM05D000163 ORTHO05D000219 3.2e-07 58.5 63 49.2
FAN14G1617 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.2e-07 58.5 63 49.2
Nn8g41126 Nelumbo nucifera HOM05D000163 ORTHO05D000219 3.2e-07 58.5 61 50.8
Prupe.3G091100 Prunus persica HOM05D000163 ORTHO05D000219 3.2e-07 58.5 52 53.8
QL12p025688 Quercus lobata HOM05D000163 ORTHO05D000219 3.2e-07 58.5 69 52.2
Nn5g27067 Nelumbo nucifera HOM05D000163 ORTHO05D000219 4.2e-07 58.2 68 47.1
QL11p008734 Quercus lobata HOM05D000163 ORTHO05D000219 4.2e-07 58.2 47 55.3
CSS0007823 Camellia sinensis var. sinensis HOM05D000163 ORTHO05D000219 5.5e-07 57.8 40 65.0
DCAR_014587 Daucus carota HOM05D000163 ORTHO05D000219 5.5e-07 57.8 39 66.7
Migut.J00840 Erythranthe guttata HOM05D000163 ORTHO05D000219 5.5e-07 57.8 64 50.0
Cpa.g.sc176.28 Carica papaya HOM05D000163 ORTHO05D000219 7.2e-07 57.4 44 59.1
PGSC0003DMG400012870 Solanum tuberosum HOM05D000163 ORTHO05D000219 7.2e-07 57.4 52 50.0
AT2G07020 Arabidopsis thaliana HOM05D000163 ORTHO05D000219 9.3e-07 57.0 39 61.5
EL10Ac2g03621 Beta vulgaris HOM05D000163 ORTHO05D000219 1.2e-06 56.6 38 63.2
Cpa.g.sc139.31 Carica papaya HOM05D000163 ORTHO05D000219 1.2e-06 56.6 50 56.0
RcHm_v2.0_Chr2g0132681 Rosa chinensis HOM05D000163 ORTHO05D000219 1.2e-06 56.6 38 65.8
RcHm_v2.0_Chr4g0397641 Rosa chinensis HOM05D000163 ORTHO05D000219 1.2e-06 56.6 54 48.1
Sabra06G0059300 Salix brachista HOM05D000163 ORTHO05D000219 1.2e-06 56.6 85 40.0
CARHR117680 Cardamine hirsuta HOM05D000163 ORTHO05D000219 1.6e-06 56.2 50 56.0
Prupe.3G100600 Prunus persica HOM05D000163 ORTHO05D000219 1.6e-06 56.2 73 45.2
TPR.G31786 Trifolium pratense HOM05D000163 ORTHO05D000219 1.6e-06 56.2 48 56.2
CAN.G172.5 Capsicum annuum HOM05D000163 ORTHO05D000219 2.1e-06 55.8 57 43.9
Gohir.D04G085300 Gossypium hirsutum HOM05D000163 ORTHO05D000219 2.1e-06 55.8 47 57.4
Gorai.012G095300 Gossypium raimondii HOM05D000163 ORTHO05D000219 2.1e-06 55.8 47 57.4
MD09G1226500 Malus domestica HOM05D000163 ORTHO05D000219 2.1e-06 55.8 74 44.6
AL3G43960 Arabidopsis lyrata HOM05D000163 ORTHO05D000219 2.7e-06 55.5 39 59.0
MSTRG.11816 Avicennia marina HOM05D000163 ORTHO05D000219 2.7e-06 55.5 35 68.6
EL10Ac2g03623 Beta vulgaris HOM05D000163 ORTHO05D000219 2.7e-06 55.5 35 68.6
BcaB08g37470 Brassica carinata HOM05D000163 ORTHO05D000219 2.7e-06 55.5 54 53.7
CSS0041238 Camellia sinensis var. sinensis HOM05D000163 ORTHO05D000219 2.7e-06 55.5 39 61.5
Cc00_g00130 Coffea canephora HOM05D000163 ORTHO05D000219 2.7e-06 55.5 42 59.5
Dinv12611 Davidia involucrata HOM05D000163 ORTHO05D000219 2.7e-06 55.5 53 49.1
PGR142G3124 Punica granatum HOM05D000163 ORTHO05D000219 2.7e-06 55.5 51 58.8
CARHR103930 Cardamine hirsuta HOM05D000163 ORTHO05D000219 3.6e-06 55.1 54 46.3
ClCG05G026370 Citrullus lanatus HOM05D000163 ORTHO05D000219 3.6e-06 55.1 61 47.5
Eucgr.C02137 Eucalyptus grandis HOM05D000163 ORTHO05D000219 3.6e-06 55.1 66 42.4
SHI03130 Sapria himalayana HOM05D000163 ORTHO05D000219 3.6e-06 55.1 47 59.6
Sp3g25130 Schrenkiella parvula HOM05D000163 ORTHO05D000219 3.6e-06 55.1 39 61.5
DCAR_001398 Daucus carota HOM05D000163 ORTHO05D000219 4.6e-06 54.7 49 55.1
MD15G1105300 Malus domestica HOM05D000163 ORTHO05D000219 4.6e-06 54.7 46 56.5
Sabra18G0128400 Salix brachista HOM05D000163 ORTHO05D000219 4.6e-06 54.7 62 50.0
Aa31LG8G7010 Aethionema arabicum HOM05D000163 ORTHO05D000219 6.1e-06 54.3 47 55.3
Carub.0003s2735 Capsella rubella HOM05D000163 ORTHO05D000219 6.1e-06 54.3 52 51.9
CAN.G1364.7 Capsicum annuum HOM05D000163 ORTHO05D000219 6.1e-06 54.3 43 60.5
MELO3C003606.2 Cucumis melo HOM05D000163 ORTHO05D000219 6.1e-06 54.3 56 50.0
MELO3C003918.2 Cucumis melo HOM05D000163 ORTHO05D000219 6.1e-06 54.3 52 53.8
CsaV3_3G047230 Cucumis sativus L. HOM05D000163 ORTHO05D000219 6.1e-06 54.3 56 50.0
Gohir.A05G345836 Gossypium hirsutum HOM05D000163 ORTHO05D000219 6.1e-06 54.3 47 57.4
Gohir.A08G253300 Gossypium hirsutum HOM05D000163 ORTHO05D000219 6.1e-06 54.3 67 47.8
Nitab4.5_0003259g0100 Nicotiana tabacum HOM05D000163 ORTHO05D000219 6.1e-06 54.3 58 44.8
Sabra18G0121300 Salix brachista HOM05D000163 ORTHO05D000219 6.1e-06 54.3 62 48.4
Sopen08g002100 Solanum pennellii HOM05D000163 ORTHO05D000219 6.1e-06 54.3 48 52.1
PGSC0003DMG400013683 Solanum tuberosum HOM05D000163 ORTHO05D000219 6.1e-06 54.3 59 49.2
THA.LOC104815432 Tarenaya hassleriana HOM05D000163 ORTHO05D000219 6.1e-06 54.3 50 48.0
A09p56330 Brassica napus HOM05D000163 ORTHO05D000219 7.9e-06 53.9 50 54.0
C08p39300 Brassica napus HOM05D000163 ORTHO05D000219 7.9e-06 53.9 50 54.0
BraA09t41028Z Brassica rapa HOM05D000163 ORTHO05D000219 7.9e-06 53.9 50 54.0
Thhalv10000051m.g Eutrema salsugineum HOM05D000163 ORTHO05D000219 7.9e-06 53.9 50 54.0
Solyc05g047550.4 Solanum lycopersicum HOM05D000163 ORTHO05D000219 7.9e-06 53.9 59 49.2
Sopen05g027860 Solanum pennellii HOM05D000163 ORTHO05D000219 7.9e-06 53.9 59 49.2


User provided reference genes

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