Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0135141 Rosa chinensis HOM05D006849 ORTHO05D003348 4.5e-67 257.7 120 100.0
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 1.7e-42 176.0 110 67.3
RcHm_v2.0_Chr2g0149141 Rosa chinensis HOM05D006849 ORTHO05D003348 2.0e-38 162.5 107 65.4
RcHm_v2.0_Chr3g0491361 Rosa chinensis HOM05D006849 ORTHO05D003348 2.6e-38 162.2 110 62.7
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 5.7e-38 161.0 107 64.5
RcHm_v2.0_Chr7g0206181 Rosa chinensis HOM05D006849 ORTHO05D003348 1.1e-36 156.8 110 60.0
RcHm_v2.0_Chr2g0174211 Rosa chinensis HOM05D006849 ORTHO05D003348 3.8e-34 148.3 108 59.3
RcHm_v2.0_Chr1g0379271 Rosa chinensis HOM05D006849 ORTHO05D003348 1.1e-33 146.7 116 53.4
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.0e-32 140.6 108 55.6
RcHm_v2.0_Chr2g0133251 Rosa chinensis HOM05D006849 ORTHO05D003348 8.0e-32 140.6 110 56.4
FAN06G4964 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.8e-31 139.4 108 54.6
RcHm_v2.0_Chr5g0004901 Rosa chinensis HOM05D006849 ORTHO05D003348 7.4e-30 134.0 104 53.8
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.3e-29 133.3 118 50.8
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.6e-27 125.6 113 53.1
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 5.9e-27 124.4 113 53.1
FAN16G1806 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-26 123.6 110 50.0
FAN23G2888 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-26 123.6 110 50.0
FvH4_5g19920 Fragaria vesca HOM05D006849 ORTHO05D003348 2.2e-26 122.5 110 50.0
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 6.5e-26 120.9 112 50.9
FAN15G3621 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.9e-25 119.4 110 48.2
FvH4_4g22470 Fragaria vesca HOM05D006849 ORTHO05D003348 4.7e-24 114.8 113 48.7
FAN19G3137 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.3e-23 112.5 114 49.1
FAN20G3125 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.2e-23 111.3 110 50.0
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 7.5e-22 107.5 90 51.1
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 7.5e-22 107.5 106 42.5
FAN27G1530 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.3e-21 104.4 109 46.8
MD17G1262000 Malus domestica HOM05D006849 ORTHO05D003348 1.1e-20 103.6 108 38.9
FAN08G0186 Fragaria x ananassa HOM05D006849 ORTHO05D003348 7.0e-20 100.9 107 43.9
MD08G1229500 Malus domestica HOM05D006849 ORTHO05D003348 1.2e-19 100.1 108 38.9
FAN26G0218 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.7e-18 96.3 106 44.3
FAN16G3151 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.5e-18 94.4 90 50.0
FAN27G2674 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.6e-16 88.6 104 39.4
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 4.7e-16 88.2 59 61.0
FAN21G0813 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-15 87.0 110 41.8
RcHm_v2.0_Chr5g0028311 Rosa chinensis HOM05D006849 ORTHO05D003348 1.0e-15 87.0 73 47.9
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.8e-15 86.3 104 34.6
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 2.3e-15 85.9 104 33.7
FAN21G3588 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.0e-15 85.1 72 55.6
FvH4_2g22171 Fragaria vesca HOM05D006849 ORTHO05D003348 5.2e-15 84.7 64 62.5
FAN24G2869 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.2e-14 83.6 113 39.8
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 2.6e-14 82.4 100 36.0
FAN21G2341 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.4e-14 81.6 85 43.5
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.4e-14 81.6 100 36.0
FvH4_5g31990 Fragaria vesca HOM05D006849 ORTHO05D003348 5.7e-14 81.3 59 55.9
FAN18G1198 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.7e-14 81.3 59 55.9
MD04G1002000 Malus domestica HOM05D029265 ORTHO05D003348 5.7e-14 81.3 110 33.6
FAN23G1437 Fragaria x ananassa HOM05D000005 ORTHO05D003348 2.2e-13 79.3 100 38.0
FAN21G0042 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.7e-13 78.6 100 38.0
FvH4_1g07041 Fragaria vesca HOM05D007856 ORTHO05D003348 6.3e-13 77.8 100 37.0
Potri.014G182232 Populus trichocarpa HOM05D018388 ORTHO05D003348 8.3e-13 77.4 110 35.5
Potri.006G172600 Populus trichocarpa HOM05D018388 ORTHO05D003348 1.4e-12 76.6 110 35.5
FAN28G1495 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.8e-12 76.3 100 34.0
MD14G1125700 Malus domestica HOM05D006849 ORTHO05D003348 5.4e-12 74.7 72 41.7
FAN05G0189 Fragaria x ananassa HOM05D007856 ORTHO05D003348 9.1e-12 73.9 84 39.3
FAN12G0440 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.2e-11 73.6 95 43.2
FAN26G2996 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.0e-11 72.8 107 35.5
FvH4_6g30401 Fragaria vesca HOM05D006849 ORTHO05D003348 2.7e-11 72.4 70 41.4
FvH4_5g29621 Fragaria vesca HOM05D006849 ORTHO05D003348 5.9e-11 71.2 64 46.9
FAN16G1061 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.9e-11 71.2 60 53.3
FAN23G1018 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.9e-11 71.2 60 53.3
Potri.003G004301 Populus trichocarpa HOM05D018388 ORTHO05D003348 7.7e-11 70.9 108 33.3
FAN09G4859 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.3e-10 70.1 100 33.0
FvH4_3g07130 Fragaria vesca HOM05D006849 ORTHO05D003348 3.8e-10 68.6 56 55.4
FvH4_3g14392 Fragaria vesca HOM05D000004 ORTHO05D000002 3.8e-10 68.6 52 59.6
FAN03G1780 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.0e-10 68.2 52 59.6
FvH4_3g24350 Fragaria vesca HOM05D006849 ORTHO05D003348 6.6e-10 67.8 53 56.6
FAN25G2444 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.6e-10 67.8 52 57.7
FAN14G5332 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.6e-10 67.4 56 55.4
FAN07G1000 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.5e-09 66.6 105 35.2
FAN10G4353 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.5e-09 66.6 65 49.2
FvH4_6g33630 Fragaria vesca HOM05D006849 ORTHO05D003348 2.5e-09 65.9 56 53.6
FAN11G1356 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.5e-09 65.9 89 37.1
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.5e-09 65.9 89 37.1
FAN26G2619 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.3e-09 65.5 58 46.6
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.3e-09 65.5 88 35.2
FAN04G0160 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.2e-09 65.1 60 51.7
FAN05G3326 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.2e-09 65.1 86 36.0
FAN06G3145 Fragaria x ananassa HOM05D013178 ORTHO05D019138 4.2e-09 65.1 60 51.7
RcHm_v2.0_Chr1g0339991 Rosa chinensis HOM05D048603 ORTHO05D003348 4.2e-09 65.1 45 53.3
FAN08G3609 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.5e-09 64.7 53 52.8
FAN09G2827 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.5e-09 64.7 54 50.0
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 9.5e-09 63.9 107 28.0
FAN20G2082 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.2e-08 63.5 50 62.0
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.2e-08 63.5 63 44.4
Thecc.09G096600 Theobroma cacao HOM05D000096 ORTHO05D000045 2.1e-08 62.8 111 34.2
FAN15G2956 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.8e-08 62.4 60 50.0
FAN16G1224 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.8e-08 62.4 60 50.0
FAN16G3375 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.8e-08 62.4 60 50.0
MD10G1198900 Malus domestica HOM05D006849 ORTHO05D003348 2.8e-08 62.4 73 32.9
FAN12G1343 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.6e-08 62.0 104 27.9
Thecc.04G012000 Theobroma cacao HOM05D000096 ORTHO05D000045 4.7e-08 61.6 111 34.2
MD02G1249900 Malus domestica HOM05D006849 ORTHO05D003348 6.1e-08 61.2 77 35.1
Thecc.03G185000 Theobroma cacao HOM05D007876 ORTHO05D000065 6.1e-08 61.2 111 34.2
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.8e-07 59.7 104 26.9
FAN24G2379 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.8e-07 59.7 86 31.4
MD05G1215800 Malus domestica HOM05D006849 ORTHO05D003348 4.0e-07 58.5 73 37.0
Thecc.04G155200 Theobroma cacao HOM05D000096 ORTHO05D000045 5.2e-07 58.2 111 33.3
FAN15G0345 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.8e-07 57.8 43 60.5
Lsat_1_v5_gn_1_127421 Lactuca sativa HOM05D052696 ORTHO05D010547 6.8e-07 57.8 106 31.1
RcHm_v2.0_Chr5g0030141 Rosa chinensis HOM05D048603 ORTHO05D003348 8.9e-07 57.4 45 51.1
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 2.6e-06 55.8 108 29.6
FAN11G4028 Fragaria x ananassa HOM05D000379 ORTHO05D000254 9.8e-06 53.9 67 37.3
FAN20G1145 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.8e-06 53.9 60 43.3


User provided reference genes

Program Settings