Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 4.7e-166 587.8 298 100.0
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 6.8e-141 504.2 289 88.9
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 7.8e-137 490.7 278 89.9
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 9.3e-114 414.1 304 73.4
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 3.9e-112 408.7 299 71.9
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 6.6e-112 407.9 233 87.1
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 5.5e-90 335.1 263 66.2
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 3.5e-89 332.4 296 61.5
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 3.5e-89 332.4 296 61.5
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 4.8e-86 322.0 251 65.3
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 1.4e-85 320.5 281 58.4
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 1.5e-84 317.0 295 58.3
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 2.1e-81 306.6 294 56.5
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 2.5e-79 299.7 260 60.0
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 1.6e-78 297.0 258 60.5
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 2.8e-78 296.2 284 58.1
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 2.8e-78 296.2 276 59.4
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 6.9e-77 291.6 250 60.0
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 1.5e-76 290.4 294 57.1
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 1.3e-75 287.3 226 65.0
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 2.2e-75 286.6 286 55.6
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 5.5e-74 282.0 255 58.8
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 9.4e-74 281.2 280 56.1
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 3.6e-73 279.3 287 54.0
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 4.6e-73 278.9 281 54.8
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 1.8e-72 276.9 294 50.0
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 2.3e-72 276.6 224 64.7
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 3.9e-72 275.8 223 63.2
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 3.9e-72 275.8 278 53.6
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 1.5e-71 273.9 256 55.1
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 7.4e-71 271.6 230 57.0
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 9.1e-69 264.6 241 56.0
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 1.5e-68 263.8 300 50.0
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 2.0e-68 263.5 246 55.3
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 3.4e-68 262.7 245 55.1
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 3.4e-68 262.7 246 54.5
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 5.0e-67 258.8 237 55.7
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 2.5e-66 256.5 251 53.0
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 2.7e-65 253.1 255 51.8
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 7.9e-65 251.5 250 52.4
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 1.8e-64 250.4 258 51.2
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 1.8e-64 250.4 251 53.8
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 8.8e-64 248.1 242 52.5
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 1.1e-63 247.7 246 52.8
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 2.6e-63 246.5 240 52.9
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 5.7e-63 245.4 251 52.2
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 9.7e-63 244.6 280 48.9
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 9.7e-63 244.6 251 52.2
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 2.2e-62 243.4 251 50.2
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 8.2e-62 241.5 298 46.6
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 1.8e-61 240.4 258 50.4
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 5.3e-61 238.8 268 50.0
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 9.1e-61 238.0 261 54.0
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 1.2e-60 237.7 272 50.0
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 3.5e-60 236.1 299 46.8
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 2.5e-58 229.9 211 55.5
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 3.2e-58 229.6 300 45.3
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 3.6e-57 226.1 198 59.6
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 1.8e-56 223.8 277 45.8
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 2.3e-56 223.4 302 43.4
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 8.8e-56 221.5 294 45.2
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 1.5e-55 220.7 245 47.8
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 1.3e-54 217.6 239 49.0
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 4.8e-54 215.7 178 61.8
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 1.4e-53 214.2 120 93.3
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 7.7e-52 208.4 256 48.4
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 2.2e-51 206.8 295 41.0
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 1.8e-48 197.2 181 55.8
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 2.8e-46 189.9 226 46.9
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 3.7e-46 189.5 203 52.2
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 8.6e-35 151.8 216 45.8
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 1.9e-34 150.6 221 39.4
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 2.9e-22 110.2 99 50.5
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 3.2e-21 106.7 99 51.5
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 1.6e-17 94.4 216 30.6
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 1.6e-17 94.4 216 30.6
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 6.2e-17 92.4 216 30.1
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 6.2e-17 92.4 216 30.6
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 8.1e-17 92.0 215 30.2
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 1.4e-16 91.3 216 29.6
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 5.2e-16 89.4 215 27.4
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 2.0e-15 87.4 216 30.1
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 2.0e-15 87.4 216 30.1
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 2.0e-15 87.4 217 27.6
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 3.7e-14 83.2 257 30.0
C03p75300 Brassica napus HOM05D002526 ORTHO05D010157 2.1e-09 67.4 216 27.3
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 5.2e-08 62.8 206 24.3
BolC3t19789H Brassica oleracea HOM05D002526 ORTHO05D010157 3.8e-06 56.6 61 45.9


User provided reference genes

Program Settings