Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 6.2e-69 264.2 155 100.0
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 3.3e-46 188.7 142 78.9
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 3.6e-45 185.3 123 90.2
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 2.2e-34 149.4 137 65.7
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.9e-34 149.1 137 65.7
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.4e-33 144.8 137 65.7
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.0e-31 140.6 137 62.8
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 3.3e-30 135.6 137 59.9
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 3.4e-27 125.6 147 52.4
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 1.9e-22 109.8 144 57.6
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 1.0e-18 97.4 139 46.8
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 6.5e-18 94.7 139 48.2
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 7.1e-17 91.3 98 57.1
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 9.3e-17 90.9 140 45.7
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 2.1e-16 89.7 145 42.8
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 5.1e-15 85.1 138 44.9
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 6.7e-15 84.7 112 45.5
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 7.4e-14 81.3 144 43.1
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 7.4e-14 81.3 138 44.2
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 9.7e-14 80.9 137 43.8
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 3.7e-13 79.0 110 48.2
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 4.8e-13 78.6 148 43.9
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 6.3e-13 78.2 110 50.9
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 1.4e-12 77.0 111 43.2
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 2.4e-12 76.3 138 43.5
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 3.1e-12 75.9 59 69.5
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 5.3e-12 75.1 106 46.2
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 5.3e-12 75.1 146 42.5
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 1.2e-11 73.9 96 52.1
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 1.5e-11 73.6 96 50.0
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 1.5e-11 73.6 98 48.0
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 2.0e-11 73.2 64 64.1
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 2.0e-11 73.2 61 63.9
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 2.6e-11 72.8 138 42.8
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 2.6e-11 72.8 137 40.1
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 2.6e-11 72.8 66 62.1
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 5.9e-11 71.6 148 37.8
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 7.7e-11 71.2 63 57.1
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 1.0e-10 70.9 138 39.9
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 1.0e-10 70.9 103 43.7
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.3e-10 70.5 56 62.5
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 2.2e-10 69.7 111 41.4
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 3.8e-10 68.9 56 62.5
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 3.8e-10 68.9 56 62.5
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 3.8e-10 68.9 139 40.3
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 6.5e-10 68.2 56 67.9
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 6.5e-10 68.2 70 52.9
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 6.5e-10 68.2 143 37.8
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 6.5e-10 68.2 64 59.4
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 8.5e-10 67.8 67 56.7
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 8.5e-10 67.8 135 41.5
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 1.4e-09 67.0 54 64.8
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 1.9e-09 66.6 137 40.1
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 1.9e-09 66.6 63 54.0
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 1.9e-09 66.6 55 58.2
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 3.2e-09 65.9 134 39.6
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 7.2e-09 64.7 56 60.7
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 9.4e-09 64.3 53 64.2
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 1.2e-08 63.9 54 66.7
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 1.2e-08 63.9 136 38.2
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 2.1e-08 63.2 62 53.2
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 2.1e-08 63.2 55 65.5
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 2.7e-08 62.8 56 58.9
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 2.7e-08 62.8 54 61.1
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 3.6e-08 62.4 60 51.7
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 3.6e-08 62.4 60 53.3
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 3.6e-08 62.4 60 53.3
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 3.6e-08 62.4 54 61.1
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 4.6e-08 62.0 138 37.0
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 6.1e-08 61.6 56 58.9
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 6.1e-08 61.6 56 58.9
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 6.1e-08 61.6 60 53.3
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 7.9e-08 61.2 55 63.6
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 7.9e-08 61.2 101 39.6
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 1.4e-07 60.5 58 51.7
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 1.8e-07 60.1 62 50.0
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 2.3e-07 59.7 60 51.7
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 2.3e-07 59.7 60 51.7
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 2.3e-07 59.7 60 51.7
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 2.3e-07 59.7 69 46.4
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 3.0e-07 59.3 64 48.4
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 3.0e-07 59.3 55 56.4
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 3.9e-07 58.9 55 54.5
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 3.9e-07 58.9 101 38.6
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 3.9e-07 58.9 54 57.4
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 5.1e-07 58.5 54 51.9
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 5.1e-07 58.5 53 58.5
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 5.1e-07 58.5 70 47.1
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 5.1e-07 58.5 58 55.2
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 5.1e-07 58.5 56 55.4
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 8.8e-07 57.8 60 48.3
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.0e-06 56.6 51 58.8
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 4.3e-06 55.5 54 53.7


User provided reference genes

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