Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 2.4e-57 225.7 151 100.0
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 2.5e-46 189.1 129 80.6
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 9.3e-46 187.2 123 90.2
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 3.9e-36 155.2 131 69.5
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.1e-36 154.8 131 69.5
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.1e-35 153.7 131 68.7
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.8e-34 148.3 125 68.8
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.1e-33 145.2 125 66.4
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 1.2e-29 133.7 121 58.7
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 8.8e-28 127.5 133 64.7
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 8.8e-20 100.9 94 62.8
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 9.7e-19 97.4 118 50.0
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 2.2e-18 96.3 117 51.3
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 4.8e-18 95.1 115 47.8
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 4.8e-18 95.1 125 46.4
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 8.2e-18 94.4 118 48.3
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 2.4e-17 92.8 115 47.8
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 5.3e-17 91.7 123 47.2
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 9.1e-17 90.9 118 51.7
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 2.6e-16 89.4 62 72.6
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 2.6e-16 89.4 110 50.0
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 2.6e-16 89.4 113 54.0
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.6e-16 89.4 115 46.1
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 1.0e-15 87.4 119 47.9
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.0e-15 87.4 63 66.7
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 1.7e-15 86.7 125 43.2
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 3.8e-15 85.5 127 44.9
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 3.8e-15 85.5 67 67.2
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 5.0e-15 85.1 108 51.9
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 8.5e-15 84.3 101 50.5
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 1.1e-14 84.0 67 65.7
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 1.1e-14 84.0 111 45.9
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 1.5e-14 83.6 68 57.4
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.9e-14 83.2 119 46.2
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 1.9e-14 83.2 106 49.1
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 3.2e-14 82.4 91 52.7
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 7.2e-14 81.3 70 65.7
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 7.2e-14 81.3 70 61.4
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 7.2e-14 81.3 118 46.6
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 1.6e-13 80.1 60 65.0
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 1.6e-13 80.1 60 65.0
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 1.6e-13 80.1 67 64.2
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 2.7e-13 79.3 67 64.2
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 2.7e-13 79.3 67 61.2
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 2.7e-13 79.3 59 66.1
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 2.7e-13 79.3 70 60.0
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.7e-13 79.3 67 62.7
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 3.6e-13 79.0 115 43.5
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 3.6e-13 79.0 60 63.3
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 4.7e-13 78.6 61 67.2
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 8.0e-13 77.8 104 46.2
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 8.0e-13 77.8 126 39.7
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 2.3e-12 76.3 64 59.4
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 4.0e-12 75.5 65 56.9
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 5.2e-12 75.1 63 61.9
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 6.7e-12 74.7 61 60.7
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 6.7e-12 74.7 66 57.6
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 1.2e-11 73.9 119 43.7
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 1.2e-11 73.9 60 66.7
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 1.2e-11 73.9 63 57.1
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 1.5e-11 73.6 64 59.4
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 1.5e-11 73.6 64 60.9
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 1.5e-11 73.6 60 63.3
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 3.3e-11 72.4 59 66.1
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 3.3e-11 72.4 67 59.7
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 3.3e-11 72.4 61 55.7
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 5.7e-11 71.6 65 49.2
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 5.7e-11 71.6 58 63.8
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 7.5e-11 71.2 55 65.5
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 9.7e-11 70.9 65 52.3
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 1.3e-10 70.5 62 53.2
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 1.3e-10 70.5 62 53.2
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 1.3e-10 70.5 64 56.2
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 1.7e-10 70.1 61 59.0
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 2.2e-10 69.7 115 40.9
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 2.2e-10 69.7 59 59.3
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 3.7e-10 68.9 65 49.2
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 3.7e-10 68.9 65 50.8
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 3.7e-10 68.9 62 58.1
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 4.8e-10 68.6 58 56.9
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 4.8e-10 68.6 64 54.7
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 6.3e-10 68.2 62 53.2
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 8.2e-10 67.8 62 51.6
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 8.2e-10 67.8 62 51.6
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 8.2e-10 67.8 62 51.6
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 1.1e-09 67.4 64 54.7
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 1.8e-09 66.6 62 51.6
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 4.1e-09 65.5 62 50.0
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 7.0e-09 64.7 61 52.5
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 1.6e-08 63.5 54 53.7
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 2.0e-08 63.2 58 55.2
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 5.9e-08 61.6 56 55.4
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.0e-07 60.8 46 67.4
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 6.5e-07 58.2 51 52.9
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.5e-06 57.0 52 55.8
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 2.5e-06 56.2 46 54.3
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 5.5e-06 55.1 55 49.1


User provided reference genes

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