Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 1.4e-24 115.5 60 100.0
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 4.6e-20 100.5 54 94.4
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 8.6e-11 69.7 66 62.1
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 1.5e-10 68.9 61 62.3
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 1.5e-10 68.9 62 66.1
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 1.9e-10 68.6 66 60.6
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 2.5e-10 68.2 59 67.8
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 3.3e-10 67.8 59 64.4
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 4.3e-10 67.4 62 66.1
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 9.5e-10 66.2 64 60.9
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 9.5e-10 66.2 64 60.9
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.6e-09 65.5 61 68.9
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 2.1e-09 65.1 65 63.1
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 2.8e-09 64.7 60 65.0
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 2.8e-09 64.7 60 65.0
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 3.6e-09 64.3 60 65.0
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 3.6e-09 64.3 60 63.3
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 4.7e-09 63.9 64 57.8
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 4.7e-09 63.9 63 58.7
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 4.7e-09 63.9 65 58.5
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 4.7e-09 63.9 60 65.0
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 6.2e-09 63.5 58 60.3
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.1e-08 62.8 64 56.2
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.1e-08 62.8 65 55.4
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 1.4e-08 62.4 58 63.8
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.8e-08 62.0 60 56.7
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.8e-08 62.0 60 56.7
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 1.8e-08 62.0 58 63.8
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.3e-08 61.6 61 59.0
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 2.3e-08 61.6 59 61.0
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 2.3e-08 61.6 59 57.6
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 3.1e-08 61.2 58 62.1
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 3.1e-08 61.2 60 61.7
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 3.1e-08 61.2 62 59.7
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 4.0e-08 60.8 60 63.3
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 4.0e-08 60.8 62 62.9
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 4.0e-08 60.8 60 58.3
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 5.2e-08 60.5 63 55.6
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 5.2e-08 60.5 62 58.1
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 5.2e-08 60.5 63 55.6
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 6.8e-08 60.1 63 54.0
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 6.8e-08 60.1 63 54.0
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 6.8e-08 60.1 63 54.0
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 6.8e-08 60.1 58 60.3
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 6.8e-08 60.1 60 55.0
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 8.9e-08 59.7 64 54.7
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 8.9e-08 59.7 64 54.7
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 8.9e-08 59.7 59 61.0
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 8.9e-08 59.7 61 57.4
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 1.2e-07 59.3 61 57.4
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.2e-07 59.3 63 54.0
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 1.2e-07 59.3 60 58.3
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 1.2e-07 59.3 58 60.3
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 1.5e-07 58.9 70 54.3
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 1.5e-07 58.9 62 56.5
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 2.0e-07 58.5 63 52.4
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 2.0e-07 58.5 63 52.4
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.0e-07 58.5 56 64.3
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 2.0e-07 58.5 59 61.0
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 2.0e-07 58.5 58 56.9
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.6e-07 58.2 64 53.1
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 2.6e-07 58.2 63 52.4
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 2.6e-07 58.2 63 52.4
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 2.6e-07 58.2 60 53.3
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 4.4e-07 57.4 63 52.4
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 4.4e-07 57.4 56 62.5
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 4.4e-07 57.4 56 64.3
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 5.8e-07 57.0 62 54.8
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 7.6e-07 56.6 64 54.7
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 7.6e-07 56.6 68 55.9
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 7.6e-07 56.6 59 55.9
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 9.9e-07 56.2 60 51.7
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 9.9e-07 56.2 56 62.5
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 1.3e-06 55.8 60 53.3
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 1.3e-06 55.8 59 59.3
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.3e-06 55.8 63 54.0
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 2.2e-06 55.1 63 52.4
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 2.9e-06 54.7 63 49.2
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.9e-06 54.7 65 52.3
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 2.9e-06 54.7 58 55.2
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 2.9e-06 54.7 58 60.3
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 3.7e-06 54.3 70 44.3
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 4.9e-06 53.9 61 50.8
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 6.4e-06 53.5 65 47.7
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 6.4e-06 53.5 66 51.5


User provided reference genes

Program Settings