Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0133621 Rosa chinensis HOM05D003004 ORTHO05D003860 8.7e-63 243.4 120 100.0
RcHm_v2.0_Chr4g0410741 Rosa chinensis HOM05D003004 ORTHO05D340404 2.8e-21 105.5 53 94.3
RcHm_v2.0_Chr2g0150811 Rosa chinensis HOM05D003004 ORTHO05D003860 4.5e-19 98.2 96 58.3
FAN05G0272 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.9e-19 97.8 96 58.3
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.9e-19 97.8 96 58.3
FvH4_6g37750 Fragaria vesca HOM05D003004 ORTHO05D003860 1.3e-18 96.7 96 57.3
Dinv26515 Davidia involucrata HOM05D003004 ORTHO05D003860 1.6e-16 89.7 96 53.1
Potri.016G089300 Populus trichocarpa HOM05D003004 ORTHO05D003860 1.6e-16 89.7 96 52.1
LjContig00310g0022930 Lotus japonicus HOM05D003004 ORTHO05D003860 2.1e-16 89.4 96 51.0
Medtr5g091930 Medicago truncatula HOM05D003004 ORTHO05D003860 2.1e-16 89.4 95 52.6
Sabra16G0095300 Salix brachista HOM05D003004 ORTHO05D003860 2.1e-16 89.4 96 52.1
MD17G1142900 Malus domestica HOM05D003004 ORTHO05D003860 2.7e-16 89.0 97 52.6
EL10Ac9g21023 Beta vulgaris HOM05D003004 ORTHO05D003860 3.6e-16 88.6 96 53.1
Dinv12715 Davidia involucrata HOM05D003004 ORTHO05D003860 3.6e-16 88.6 97 51.5
TPR.G12698 Trifolium pratense HOM05D003004 ORTHO05D003860 3.6e-16 88.6 95 51.6
arahy.Tifrunner.gnm1.ann1.6YST69 Arachis hypogaea HOM05D003004 ORTHO05D003860 4.7e-16 88.2 96 51.0
Cc05_g09160 Coffea canephora HOM05D003004 ORTHO05D003860 4.7e-16 88.2 96 51.0
Lalb_Chr10g0106821 Lupinus albus HOM05D003004 ORTHO05D003860 4.7e-16 88.2 96 49.0
Glyma.08G311200 Glycine max HOM05D003004 ORTHO05D003860 6.1e-16 87.8 96 50.0
Glyma.18G104400 Glycine max HOM05D003004 ORTHO05D003860 6.1e-16 87.8 96 50.0
Prupe.3G169400 Prunus persica HOM05D003004 ORTHO05D003860 6.1e-16 87.8 97 51.5
VMungo0540G1035 Vigna mungo HOM05D003004 ORTHO05D003860 6.1e-16 87.8 96 50.0
vmacro12432 Vaccinium macrocarpon HOM05D003004 ORTHO05D003860 8.0e-16 87.4 96 52.1
arahy.Tifrunner.gnm1.ann1.7JY60E Arachis hypogaea HOM05D003004 ORTHO05D003860 1.0e-15 87.0 96 50.0
arahy.Tifrunner.gnm1.ann1.7SJ9JV Arachis hypogaea HOM05D003004 ORTHO05D003860 1.0e-15 87.0 96 50.0
arahy.Tifrunner.gnm1.ann1.H9U4YS Arachis hypogaea HOM05D003004 ORTHO05D003860 1.0e-15 87.0 96 50.0
Atru.chr6.3557 Acer truncatum HOM05D003004 ORTHO05D003860 1.4e-15 86.7 95 51.6
CAN.G1481.12 Capsicum annuum HOM05D003004 ORTHO05D003860 1.4e-15 86.7 96 51.0
Glyma.14G026400 Glycine max HOM05D003004 ORTHO05D003860 1.4e-15 86.7 96 49.0
SalBow7G3009 Salvia bowleyana HOM05D003004 ORTHO05D003860 1.4e-15 86.7 96 53.1
CiPaw.04G135400 Carya illinoinensis HOM05D003004 ORTHO05D003860 1.8e-15 86.3 96 50.0
Duzib147G1628 Durio zibethinus HOM05D003004 ORTHO05D003860 1.8e-15 86.3 96 51.0
Manes.02G086900 Manihot esculenta HOM05D003004 ORTHO05D003860 1.8e-15 86.3 96 52.1
Nn3g21011 Nelumbo nucifera HOM05D003004 ORTHO05D003860 1.8e-15 86.3 97 53.6
Oeu026478.3 Olea europaea HOM05D003004 ORTHO05D003860 1.8e-15 86.3 95 51.6
Phvul.006G035500 Phaseolus vulgaris HOM05D003004 ORTHO05D003860 1.8e-15 86.3 96 49.0
Psat0s4248g0040 Pisum sativum HOM05D003004 ORTHO05D003860 1.8e-15 86.3 98 52.0
Solyc12g011000.2 Solanum lycopersicum HOM05D003004 ORTHO05D003860 1.8e-15 86.3 96 51.0
Aqoxy4G00197 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 2.3e-15 85.9 96 51.0
CAN.G486.13 Capsicum annuum HOM05D003004 ORTHO05D003860 2.3e-15 85.9 96 51.0
Ciclev10014944m.g Citrus clementina HOM05D003004 ORTHO05D003860 2.3e-15 85.9 96 50.0
Migut.M00216 Erythranthe guttata HOM05D003004 ORTHO05D003860 2.3e-15 85.9 97 50.5
Gohir.A11G059700 Gossypium hirsutum HOM05D003004 ORTHO05D003860 2.3e-15 85.9 96 51.0
Gohir.D11G063800 Gossypium hirsutum HOM05D003004 ORTHO05D003860 2.3e-15 85.9 96 51.0
Gorai.007G069000 Gossypium raimondii HOM05D003004 ORTHO05D003860 2.3e-15 85.9 96 51.0
Peaxi162Scf00807g00038 Petunia axillaris HOM05D003004 ORTHO05D003860 2.3e-15 85.9 96 51.0
GSVIVG01000817001 Vitis vinifera HOM05D003004 ORTHO05D003860 2.3e-15 85.9 96 49.0
PGR042G3476 Punica granatum HOM05D003004 ORTHO05D003860 3.0e-15 85.5 96 49.0
Sopen12g006360 Solanum pennellii HOM05D003004 ORTHO05D003860 3.0e-15 85.5 96 51.0
PGSC0003DMG400007797 Solanum tuberosum HOM05D003004 ORTHO05D003860 3.0e-15 85.5 96 51.0
Thhalv10005906m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 4.0e-15 85.1 95 50.5
SalBow7G3774 Salvia bowleyana HOM05D003004 ORTHO05D003860 4.0e-15 85.1 96 52.1
Sp5g04090 Schrenkiella parvula HOM05D003004 ORTHO05D003860 4.0e-15 85.1 95 50.5
A07p24330 Brassica napus HOM05D003004 ORTHO05D003860 5.2e-15 84.7 95 50.5
C06p25730 Brassica napus HOM05D003004 ORTHO05D003860 5.2e-15 84.7 95 50.5
BolC6t37735H Brassica oleracea HOM05D003004 ORTHO05D003860 5.2e-15 84.7 95 50.5
BraA07t30079Z Brassica rapa HOM05D003004 ORTHO05D003860 5.2e-15 84.7 95 50.5
AUR62024005 Chenopodium quinoa HOM05D003004 ORTHO05D003860 5.2e-15 84.7 96 52.1
Eucgr.A01955 Eucalyptus grandis HOM05D003004 ORTHO05D003860 5.2e-15 84.7 96 50.0
MD09G1156400 Malus domestica HOM05D003004 ORTHO05D003860 5.2e-15 84.7 97 50.5
Manes.01G129000 Manihot esculenta HOM05D003004 ORTHO05D003860 5.2e-15 84.7 96 51.0
Nitab4.5_0005521g0030 Nicotiana tabacum HOM05D003004 ORTHO05D003860 5.2e-15 84.7 96 51.0
Nitab4.5_0010286g0010 Nicotiana tabacum HOM05D003004 ORTHO05D003860 5.2e-15 84.7 96 51.0
Thecc.01G158700 Theobroma cacao HOM05D003004 ORTHO05D003860 5.2e-15 84.7 96 50.0
ATR0213G001 Amborella trichopoda HOM05D003004 ORTHO05D003860 6.8e-15 84.3 96 49.0
Peaxi162Scf00154g00814 Petunia axillaris HOM05D003004 ORTHO05D003860 6.8e-15 84.3 96 50.0
TPR.G13562 Trifolium pratense HOM05D003004 ORTHO05D003860 6.8e-15 84.3 96 52.1
TWI14G0060 Tripterygium wilfordii HOM05D003004 ORTHO05D003860 6.8e-15 84.3 96 51.0
MSTRG.6769 Avicennia marina HOM05D003004 ORTHO05D003860 8.8e-15 84.0 96 49.0
BcaC07g40224 Brassica carinata HOM05D003004 ORTHO05D003860 8.8e-15 84.0 95 49.5
PSO170G1739 Papaver somniferum HOM05D003004 ORTHO05D003860 8.8e-15 84.0 96 49.0
PSO528G0280 Papaver somniferum HOM05D003004 ORTHO05D003860 8.8e-15 84.0 96 49.0
unitig_746.g26658 Utricularia gibba HOM05D003004 ORTHO05D003860 8.8e-15 84.0 96 49.0
VMungo0647G1404 Vigna mungo HOM05D003004 ORTHO05D003860 8.8e-15 84.0 96 49.0
ClCG02G018250 Citrullus lanatus HOM05D003004 ORTHO05D003860 1.2e-14 83.6 96 51.0
MELO3C019711.2 Cucumis melo HOM05D003004 ORTHO05D003860 1.2e-14 83.6 96 51.0
CsaV3_6G015630 Cucumis sativus L. HOM05D003004 ORTHO05D003860 1.2e-14 83.6 96 51.0
THA.LOC104803095 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 1.2e-14 83.6 100 50.0
Actinidia11186 Actinidia chinensis HOM05D003004 ORTHO05D003860 1.5e-14 83.2 96 50.0
Hma1.2p1_0178F.1_g078210 Hydrangea macrophylla HOM05D003004 ORTHO05D003860 1.5e-14 83.2 96 50.0
MBI06_g08524_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 1.5e-14 83.2 95 50.5
SalBow7G4649 Salvia bowleyana HOM05D003004 ORTHO05D003860 1.5e-14 83.2 96 49.0
Sed0013377 Sechium edule HOM05D003004 ORTHO05D003860 1.5e-14 83.2 96 51.0
TAR629G1040 Trochodendron aralioides HOM05D003004 ORTHO05D003860 1.5e-14 83.2 96 50.0
A09p51310 Brassica napus HOM05D003004 ORTHO05D003860 2.0e-14 82.8 95 48.4
C08p34090 Brassica napus HOM05D003004 ORTHO05D003860 2.0e-14 82.8 95 48.4
BolC8t51008H Brassica oleracea HOM05D003004 ORTHO05D003860 2.0e-14 82.8 95 48.4
BraA09t40572Z Brassica rapa HOM05D003004 ORTHO05D003860 2.0e-14 82.8 95 48.4
Glyma.02G288500 Glycine max HOM05D003004 ORTHO05D003860 2.0e-14 82.8 96 47.9
Lj6g0001020 Lotus japonicus HOM05D003004 ORTHO05D003860 2.0e-14 82.8 95 48.4
Medtr3g048920 Medicago truncatula HOM05D003004 ORTHO05D003860 2.0e-14 82.8 98 50.0
THA.LOC104802267 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 2.0e-14 82.8 101 49.5
CiPaw.03G195600 Carya illinoinensis HOM05D003004 ORTHO05D003860 2.6e-14 82.4 96 50.0
Lalb_Chr04g0248661 Lupinus albus HOM05D003004 ORTHO05D003860 2.6e-14 82.4 96 46.9
QL08p043421 Quercus lobata HOM05D003004 ORTHO05D003860 2.6e-14 82.4 96 49.0
SGA_v2.0_scaffold538G52785 Striga asiatica HOM05D003004 ORTHO05D003860 2.6e-14 82.4 96 49.0
TAR627G0638 Trochodendron aralioides HOM05D003004 ORTHO05D003860 2.6e-14 82.4 96 49.0
CSS0034735 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 3.4e-14 82.0 96 49.0
AUR62036394 Chenopodium quinoa HOM05D003004 ORTHO05D003860 3.4e-14 82.0 96 51.0
COL.COLO4_33706 Corchorus olitorius HOM05D003004 ORTHO05D003860 3.4e-14 82.0 100 50.0
Sopen07g029210 Solanum pennellii HOM05D003004 ORTHO05D003860 3.4e-14 82.0 96 49.0
PGSC0003DMG400017338 Solanum tuberosum HOM05D003004 ORTHO05D003860 3.4e-14 82.0 96 49.0
Cpa.g.sc50.64 Carica papaya HOM05D003004 ORTHO05D003860 4.4e-14 81.6 96 50.0
MSTRG.14300 Avicennia marina HOM05D003004 ORTHO05D003860 5.7e-14 81.3 95 50.5
Potri.014G141900 Populus trichocarpa HOM05D003004 ORTHO05D003860 5.7e-14 81.3 95 50.5
A05p03250 Brassica napus HOM05D003004 ORTHO05D003860 7.5e-14 80.9 95 49.5
A05p03320 Brassica napus HOM05D003004 ORTHO05D003860 7.5e-14 80.9 95 49.5
BraA05t19314Z Brassica rapa HOM05D003004 ORTHO05D003860 7.5e-14 80.9 95 49.5
BraA09t41560Z Brassica rapa HOM05D003004 ORTHO05D003860 7.5e-14 80.9 95 49.5
Ca_14627_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 7.5e-14 80.9 98 49.0
Ca_30924_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 7.5e-14 80.9 98 49.0
Oeu006149.1 Olea europaea HOM05D003004 ORTHO05D003860 7.5e-14 80.9 95 48.4
Sc12g0003790 Simmondsia chinensis HOM05D003004 ORTHO05D003860 7.5e-14 80.9 96 49.0
Aa31LG1G24550 Aethionema arabicum HOM05D003004 ORTHO05D003860 9.8e-14 80.5 95 49.5
CSS0027416 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 9.8e-14 80.5 96 47.9
Hund00825 Selenicereus undatus HOM05D003004 ORTHO05D003860 9.8e-14 80.5 96 49.0
C04p03890 Brassica napus HOM05D003004 ORTHO05D003860 1.7e-13 79.7 95 48.4
BolC4t22025H Brassica oleracea HOM05D003004 ORTHO05D003860 1.7e-13 79.7 95 48.4
Aqoxy1G01921 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 2.2e-13 79.3 95 46.3
BcaB02g07501 Brassica carinata HOM05D003004 ORTHO05D003860 2.2e-13 79.3 96 50.0
CDE10G1091 Ceratophyllum demersum HOM05D003004 ORTHO05D003860 2.2e-13 79.3 95 48.4
Solyc07g055840.3 Solanum lycopersicum HOM05D003004 ORTHO05D003860 2.2e-13 79.3 96 47.9
CARHR137870 Cardamine hirsuta HOM05D003004 ORTHO05D003860 2.8e-13 79.0 98 49.0
CARHR169140 Cardamine hirsuta HOM05D003004 ORTHO05D003860 4.8e-13 78.2 96 47.9
Lj1A586T32 Lonicera japonica HOM05D003004 ORTHO05D003860 4.8e-13 78.2 95 48.4
Carub.0005s2554 Capsella rubella HOM05D003004 ORTHO05D003860 1.1e-12 77.0 97 47.4
AL4G41400 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 1.8e-12 76.3 98 46.9
Thhalv10016536m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 1.8e-12 76.3 98 48.0
HanXRQChr12g0367491 Helianthus annuus HOM05D003004 ORTHO05D003860 1.8e-12 76.3 97 49.5
Lsat_1_v5_gn_8_31881 Lactuca sativa HOM05D003004 ORTHO05D003860 1.8e-12 76.3 98 48.0
DCAR_009790 Daucus carota HOM05D003004 ORTHO05D003860 2.4e-12 75.9 104 43.3
ECA233G2966 Erigeron canadensis HOM05D003004 ORTHO05D003860 2.4e-12 75.9 98 48.0
Sp4g24910 Schrenkiella parvula HOM05D003004 ORTHO05D003860 2.4e-12 75.9 98 46.9
AagrBONN_evm.TU.Sc2ySwM_368.567 Anthoceros agrestis HOM05D003004 ORTHO05D003860 4.1e-12 75.1 100 43.0
AL5G40520 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 4.1e-12 75.1 97 45.4
AT2G42790 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 4.1e-12 75.1 98 45.9
AT3G58750 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 4.1e-12 75.1 97 45.4
Carub.0004s2523 Capsella rubella HOM05D003004 ORTHO05D003860 5.4e-12 74.7 98 45.9
HanXRQChr13g0386841 Helianthus annuus HOM05D003004 ORTHO05D003860 5.4e-12 74.7 97 48.5
Pp3c23_9030 Physcomitrium patens HOM05D003004 ORTHO05D003860 2.0e-11 72.8 93 44.1
SMO367G0491 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 2.7e-11 72.4 93 45.2
Zm00001eb239300 Zea mays HOM05D003004 ORTHO05D003860 2.7e-11 72.4 96 43.8
Rhsim06G0122300 Rhododendron simsii HOM05D003004 ORTHO05D003860 3.5e-11 72.0 124 40.3
HPP92_006375 Vanilla planifolia HOM05D003004 ORTHO05D003860 7.7e-11 70.9 96 43.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.0e-10 70.5 82 48.8
Os02g0232400 Oryza sativa ssp. japonica HOM05D003004 ORTHO05D003860 1.3e-10 70.1 96 41.7
Sabra14G0107100 Salix brachista HOM05D003004 ORTHO05D003860 8.6e-10 67.4 79 48.1
DCAR_012665 Daucus carota HOM05D003004 ORTHO05D003860 1.1e-09 67.0 91 42.9
Pp3c12_7740 Physcomitrium patens HOM05D003004 ORTHO05D003860 4.2e-09 65.1 93 41.9
MBI07_g00476_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 5.5e-09 64.7 79 46.8
Mapoly0091s0007 Marchantia polymorpha HOM05D003004 ORTHO05D003860 9.5e-09 63.9 95 43.2
Ah.01g004780 Amaranthus hybridus HOM05D003004 ORTHO05D003860 4.7e-08 61.6 42 69.0
Thhalv10006483m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 8.9e-07 57.4 82 43.9
CBR_g4482 Chara braunii HOM05D003004 ORTHO05D003860 2.0e-06 56.2 93 36.6
CARHR169120 Cardamine hirsuta HOM05D003004 ORTHO05D003860 3.4e-06 55.5 71 45.1
Mapoly0111s0039 Marchantia polymorpha HOM05D003004 ORTHO05D003860 5.7e-06 54.7 93 38.7


User provided reference genes

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