Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 1.1e-56 223.0 113 100.0
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.0e-49 198.4 113 88.5
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 6.7e-49 197.2 113 87.6
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 7.5e-48 193.7 113 85.8
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 4.8e-47 191.0 113 84.1
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 1.8e-41 172.6 113 75.2
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 4.8e-39 164.5 113 71.7
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.3e-39 163.7 112 74.1
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 7.5e-32 140.6 111 63.1
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 3.7e-31 138.3 107 64.5
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 4.9e-31 137.9 111 65.8
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.4e-30 136.3 103 65.0
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 4.1e-30 134.8 108 62.0
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 5.4e-30 134.4 115 60.0
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 5.4e-30 134.4 108 63.9
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 1.2e-29 133.3 98 68.4
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 1.6e-29 132.9 108 63.9
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 3.5e-29 131.7 117 56.4
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 3.5e-29 131.7 117 56.4
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 5.9e-29 131.0 108 61.1
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.0e-28 130.2 108 62.0
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.7e-28 129.4 108 62.0
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.7e-28 129.4 109 59.6
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 1.7e-28 129.4 106 64.2
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 8.6e-28 127.1 108 59.3
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 1.5e-27 126.3 105 61.9
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 2.5e-27 125.6 92 66.3
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 2.5e-27 125.6 92 66.3
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 2.5e-27 125.6 105 59.0
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 4.3e-27 124.8 113 59.3
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 5.6e-27 124.4 112 54.5
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 7.3e-27 124.0 94 61.7
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 9.5e-27 123.6 102 62.7
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 1.2e-26 123.2 113 52.2
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 2.1e-26 122.5 107 58.9
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 3.6e-26 121.7 91 64.8
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 3.6e-26 121.7 115 56.5
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 6.1e-26 120.9 91 64.8
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 8.0e-26 120.6 105 56.2
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 8.0e-26 120.6 95 60.0
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 8.0e-26 120.6 88 67.0
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 1.0e-25 120.2 88 67.0
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 1.0e-25 120.2 92 65.2
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 1.0e-25 120.2 97 63.9
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 1.4e-25 119.8 92 66.3
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 1.8e-25 119.4 109 57.8
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 2.3e-25 119.0 88 67.0
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 2.3e-25 119.0 88 67.0
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 3.0e-25 118.6 115 53.9
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 4.0e-25 118.2 117 53.0
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 4.0e-25 118.2 115 53.9
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 6.8e-25 117.5 91 63.7
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 8.9e-25 117.1 88 64.8
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 8.9e-25 117.1 94 62.8
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 1.2e-24 116.7 84 69.0
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.2e-24 116.7 115 52.2
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 2.0e-24 115.9 92 66.3
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 2.0e-24 115.9 91 64.8
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.4e-24 115.2 109 56.9
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 4.4e-24 114.8 111 56.8
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 5.7e-24 114.4 100 56.0
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 5.7e-24 114.4 94 57.4
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 9.8e-24 113.6 95 60.0
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 9.8e-24 113.6 94 59.6
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.3e-23 113.2 90 63.3
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 2.9e-23 112.1 105 52.4
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 8.3e-23 110.5 90 61.1
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 8.3e-23 110.5 91 59.3
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 9.2e-22 107.1 100 54.0
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 1.2e-21 106.7 112 49.1
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 5.9e-21 104.4 92 57.6
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 2.3e-20 102.4 87 62.1
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 3.0e-20 102.1 96 58.3
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 3.0e-20 102.1 96 60.4
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.1e-19 100.1 98 51.0
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 1.5e-19 99.8 117 46.2
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 3.3e-19 98.6 92 54.3
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 2.1e-18 95.9 82 59.8
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 2.8e-18 95.5 96 53.1
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 4.7e-18 94.7 91 56.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.2e-16 90.1 89 47.2
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 5.8e-16 87.8 95 48.4
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 4.9e-15 84.7 86 54.7
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 2.4e-14 82.4 78 57.7
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 4.1e-14 81.6 81 54.3
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 7.8e-13 77.4 91 46.2
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 2.1e-10 69.3 99 44.4
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 2.6e-08 62.4 75 46.7
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 5.8e-08 61.2 74 47.3


User provided reference genes

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