Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0133021 Rosa chinensis HOM05D009149 ORTHO05D003639 1.1e-95 353.2 169 100.0
RcHm_v2.0_Chr3g0493631 Rosa chinensis HOM05D009149 ORTHO05D003639 2.9e-80 302.0 167 86.2
RcHm_v2.0_Chr2g0105541 Rosa chinensis HOM05D009149 ORTHO05D003639 3.1e-74 282.0 167 80.8
RcHm_v2.0_Chr1g0350201 Rosa chinensis HOM05D009149 ORTHO05D003639 4.5e-73 278.1 167 80.2
RcHm_v2.0_Chr2g0131351 Rosa chinensis HOM05D009149 ORTHO05D003639 5.0e-72 274.6 167 78.4
RcHm_v2.0_Chr6g0291271 Rosa chinensis HOM05D009149 ORTHO05D003639 1.2e-70 270.0 167 76.6
RcHm_v2.0_Chr1g0336001 Rosa chinensis HOM05D009149 ORTHO05D003639 3.6e-70 268.5 167 76.0
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 7.4e-60 234.2 167 65.3
RcHm_v2.0_Chr6g0262131 Rosa chinensis HOM05D009149 ORTHO05D003639 1.2e-57 226.9 132 81.8
FvH4_4g18552 Fragaria vesca HOM05D009149 ORTHO05D003639 3.8e-56 221.9 167 61.1
RcHm_v2.0_Chr4g0419521 Rosa chinensis HOM05D009149 ORTHO05D003639 1.1e-47 193.7 95 94.7
FvH4_1g21382 Fragaria vesca HOM05D016497 ORTHO05D019154 7.3e-31 137.9 157 43.9
FvH4_1g29795 Fragaria vesca HOM05D009149 ORTHO05D003639 4.4e-28 128.6 157 42.0
FvH4_2g35573 Fragaria vesca HOM05D009149 ORTHO05D003639 5.8e-20 101.7 157 35.7
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 4.9e-19 98.6 108 42.6
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 4.9e-19 98.6 108 42.6
RcHm_v2.0_Chr6g0249161 Rosa chinensis HOM05D008702 ORTHO05D003639 4.9e-19 98.6 108 42.6
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 1.1e-18 97.4 108 41.7
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 1.9e-18 96.7 108 41.7
RcHm_v2.0_Chr5g0004321 Rosa chinensis HOM05D008702 ORTHO05D003639 3.2e-18 95.9 108 41.7
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 6.0e-17 91.7 108 40.7
RcHm_v2.0_Chr4g0410321 Rosa chinensis HOM05D009149 ORTHO05D003639 6.0e-17 91.7 49 83.7
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 2.9e-11 72.8 113 35.4
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 2.9e-11 72.8 113 35.4
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 3.7e-11 72.4 113 35.4
COL.COLO4_28241 Corchorus olitorius HOM05D015644 ORTHO05D016958 4.9e-11 72.0 111 32.4
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 4.9e-11 72.0 107 35.5
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 6.4e-11 71.6 120 34.2
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 8.3e-11 71.2 112 33.0
COL.COLO4_04628 Corchorus olitorius HOM05D015644 ORTHO05D016958 1.1e-10 70.9 111 32.4
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 1.9e-10 70.1 107 34.6
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.2e-10 69.3 112 33.9
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 7.1e-10 68.2 61 42.6
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.0e-08 64.3 70 38.6
Peaxi162Scf00169g00112 Petunia axillaris HOM05D008778 ORTHO05D003639 1.0e-08 64.3 107 32.7
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.0e-08 62.8 61 37.7
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 6.6e-08 61.6 61 37.7
CSS0049833 Camellia sinensis var. sinensis HOM05D009149 ORTHO05D003639 1.1e-07 60.8 65 38.5
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 1.5e-07 60.5 78 28.2
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 2.5e-07 59.7 61 37.7
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 3.3e-07 59.3 61 39.3


User provided reference genes

Program Settings