Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 2.7e-36 154.8 79 100.0
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 4.6e-28 127.5 72 88.9
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 6.0e-28 127.1 71 87.3
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.0e-27 126.3 80 78.8
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 1.0e-27 126.3 85 78.8
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 5.1e-27 124.0 92 71.7
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.9e-26 122.1 85 77.6
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 3.3e-26 121.3 86 74.4
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 7.3e-26 120.2 83 72.3
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.2e-25 119.4 71 77.5
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.6e-25 119.0 78 79.5
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.6e-25 119.0 77 74.0
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.6e-25 119.0 77 74.0
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.6e-25 119.0 66 83.3
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.8e-25 118.2 85 72.9
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 3.6e-25 117.9 76 72.4
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 3.6e-25 117.9 70 80.0
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 4.7e-25 117.5 71 76.1
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 4.7e-25 117.5 78 78.2
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 4.7e-25 117.5 78 79.5
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 4.7e-25 117.5 78 78.2
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 1.1e-24 116.3 69 84.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.1e-24 116.3 72 75.0
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.4e-24 115.9 85 72.9
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.4e-24 115.9 78 71.8
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.8e-24 115.5 70 77.1
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.8e-24 115.5 80 71.2
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 2.4e-24 115.2 81 72.8
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 4.0e-24 114.4 85 70.6
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 4.0e-24 114.4 77 68.8
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 4.0e-24 114.4 82 67.1
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 4.0e-24 114.4 80 71.2
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 9.0e-24 113.2 72 73.6
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.2e-23 112.8 74 71.6
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 2.0e-23 112.1 71 73.2
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 2.0e-23 112.1 62 82.3
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.0e-23 112.1 71 73.2
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 2.6e-23 111.7 83 71.1
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 2.6e-23 111.7 69 78.3
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 2.6e-23 111.7 84 67.9
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 3.4e-23 111.3 83 67.5
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 5.8e-23 110.5 77 67.5
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 5.8e-23 110.5 71 71.8
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 9.9e-23 109.8 79 68.4
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 9.9e-23 109.8 79 68.4
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.3e-22 109.4 87 65.5
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.7e-22 109.0 73 69.9
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 2.2e-22 108.6 86 65.1
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 2.2e-22 108.6 70 77.1
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.9e-22 108.2 73 68.5
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.9e-22 108.2 73 74.0
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.9e-22 108.2 69 71.0
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.9e-22 108.2 69 71.0
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 6.4e-22 107.1 72 68.1
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.1e-21 106.3 71 67.6
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.9e-21 105.5 70 70.0
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.9e-21 105.5 69 75.4
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 3.2e-21 104.8 84 65.5
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 3.2e-21 104.8 84 65.5
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 4.2e-21 104.4 79 64.6
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 4.2e-21 104.4 63 74.6
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 5.4e-21 104.0 55 85.5
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 5.4e-21 104.0 80 60.0
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 5.4e-21 104.0 83 66.3
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 9.3e-21 103.2 68 67.6
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 9.3e-21 103.2 77 63.6
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 3.5e-20 101.3 84 63.1
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 6.0e-20 100.5 70 65.7
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.0e-19 99.8 67 65.7
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 1.0e-19 99.8 63 68.3
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.0e-19 99.8 76 61.8
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.3e-19 99.4 75 61.3
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.5e-18 95.9 75 64.0
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 8.1e-17 90.1 60 65.0
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 2.4e-16 88.6 83 59.0
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.5e-15 85.9 72 56.9
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.0e-15 85.5 47 76.6
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.0e-15 85.5 72 56.9
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.0e-15 85.5 49 69.4
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 3.4e-15 84.7 86 60.5
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 3.4e-15 84.7 89 53.9
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 4.5e-15 84.3 68 55.9
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 5.8e-15 84.0 53 64.2
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 5.8e-15 84.0 53 64.2
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 7.6e-15 83.6 67 56.7
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 7.6e-15 83.6 53 64.2
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 4.9e-14 80.9 52 63.5
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 4.9e-14 80.9 52 63.5
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 6.4e-14 80.5 66 57.6
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.1e-13 79.7 47 76.6
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 1.4e-13 79.3 48 70.8
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.4e-13 79.3 111 40.5
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.4e-13 78.6 52 69.2
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.2e-13 78.2 47 66.0
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 3.2e-13 78.2 70 52.9
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 3.2e-13 78.2 59 62.7
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 3.2e-13 78.2 46 76.1
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 4.2e-13 77.8 73 52.1
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 4.2e-13 77.8 68 54.4
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 7.1e-13 77.0 52 59.6
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.6e-12 75.9 47 61.7
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 1.6e-12 75.9 46 69.6
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.6e-12 75.9 55 60.0
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.1e-12 75.5 46 65.2
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 2.7e-12 75.1 72 51.4
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 3.5e-12 74.7 57 56.1
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 7.9e-12 73.6 77 49.4
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 7.9e-12 73.6 77 49.4
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 7.9e-12 73.6 77 49.4
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 1.3e-11 72.8 72 50.0
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.0e-11 71.6 55 61.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 3.9e-11 71.2 56 64.3
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 6.7e-11 70.5 42 69.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 6.7e-11 70.5 57 61.4
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 8.7e-11 70.1 38 71.1
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 8.7e-11 70.1 43 62.8
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.1e-10 69.7 76 44.7
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.5e-10 69.3 62 51.6
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 2.5e-10 68.6 41 63.4
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-10 68.6 42 66.7
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 3.3e-10 68.2 40 67.5
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.8e-09 65.1 53 56.6
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 6.2e-09 63.9 38 71.1
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 6.9e-08 60.5 50 42.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 1.2e-07 59.7 44 50.0
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.2e-07 59.7 54 51.9
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 1.5e-07 59.3 65 47.7
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 2.0e-07 58.9 42 52.4
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.8e-06 54.7 51 52.9


User provided reference genes

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