Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 4.1e-130 468.0 225 100.0
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.2e-113 413.3 237 85.7
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.3e-109 399.1 248 81.0
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.2e-105 386.7 226 81.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 3.6e-102 375.2 226 79.2
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.2e-100 370.2 228 78.5
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.2e-94 350.1 244 75.4
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 3.0e-88 328.9 224 70.1
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.9e-87 326.2 219 72.1
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.8e-86 322.4 208 70.7
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 5.2e-85 318.2 226 68.1
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.0e-84 316.2 266 66.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 4.4e-84 315.1 216 68.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 7.5e-84 314.3 219 67.1
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.7e-83 313.2 215 67.9
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 3.7e-83 312.0 215 67.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 4.9e-83 311.6 215 69.3
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 8.3e-83 310.8 228 63.6
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.4e-82 309.3 224 67.4
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 5.4e-82 308.1 202 67.8
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.1e-82 307.8 215 70.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.6e-81 306.6 240 62.9
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.5e-81 305.4 224 62.1
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.5e-81 305.4 218 65.6
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.0e-80 303.9 208 65.4
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.7e-80 303.1 223 66.4
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.0e-80 302.4 219 64.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 3.9e-80 302.0 223 65.5
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.5e-79 300.1 187 73.8
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 7.3e-79 297.7 227 63.0
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 7.3e-79 297.7 214 63.1
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.6e-78 296.6 201 64.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 3.6e-78 295.4 227 60.8
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 3.6e-78 295.4 223 61.9
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.6e-78 295.4 200 66.5
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 4.7e-78 295.0 217 62.2
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 6.2e-78 294.7 216 63.0
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 8.1e-78 294.3 202 63.9
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.8e-77 293.1 223 63.7
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 4.0e-77 292.0 227 59.9
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 4.0e-77 292.0 215 65.6
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 5.2e-77 291.6 202 63.9
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 5.2e-77 291.6 227 62.6
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 8.9e-77 290.8 212 62.3
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 8.9e-77 290.8 216 62.5
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.0e-76 289.7 152 94.1
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.6e-76 289.3 251 58.6
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.3e-75 287.0 212 63.7
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.9e-75 285.8 227 61.2
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 4.9e-75 285.0 228 61.8
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 8.4e-75 284.3 219 61.2
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.4e-75 284.3 228 61.8
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.1e-74 283.9 222 62.6
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-74 283.9 235 57.9
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 3.2e-74 282.3 228 61.0
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 9.2e-74 280.8 214 63.1
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 4.6e-73 278.5 206 61.7
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.0e-72 277.3 211 60.7
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.3e-72 276.9 222 59.5
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.3e-72 276.2 209 61.7
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-71 273.5 210 62.4
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-71 273.5 230 60.4
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 4.3e-71 271.9 191 62.8
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.2e-70 270.4 211 59.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.1e-70 269.6 217 61.3
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 3.6e-70 268.9 204 58.8
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 8.1e-70 267.7 218 53.2
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-69 267.3 202 59.9
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-69 267.3 202 59.9
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.8e-69 266.5 213 58.7
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 3.1e-69 265.8 202 59.9
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 5.2e-69 265.0 224 58.0
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.2e-68 263.8 221 54.3
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.0e-68 263.1 209 57.9
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 3.4e-68 262.3 181 66.3
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 4.4e-68 261.9 214 55.6
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 4.4e-68 261.9 204 57.8
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 5.8e-68 261.5 202 57.9
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-67 260.0 221 57.0
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.7e-67 260.0 219 55.3
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.2e-67 259.6 217 53.0
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 4.9e-67 258.5 213 53.5
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 6.4e-67 258.1 221 56.6
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 6.4e-67 258.1 222 54.1
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.2e-66 255.8 214 54.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 7.1e-66 254.6 207 57.5
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-65 253.8 205 56.6
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.2e-65 253.8 205 56.6
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.2e-65 253.8 221 55.2
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 2.1e-65 253.1 166 66.9
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 6.0e-65 251.5 221 55.7
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 6.0e-65 251.5 221 54.8
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 7.8e-65 251.1 222 55.9
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.8e-65 251.1 222 55.9
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 3.0e-64 249.2 206 53.9
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 3.0e-64 249.2 221 55.7
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 3.0e-64 249.2 221 55.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 8.7e-64 247.7 196 55.1
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.9e-63 246.5 229 57.6
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.9e-63 246.5 229 51.1
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.5e-63 246.1 214 57.5
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 4.3e-63 245.4 204 51.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 5.6e-63 245.0 216 53.2
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 7.3e-63 244.6 205 58.5
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 9.6e-63 244.2 208 54.3
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.3e-62 243.8 222 53.6
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.6e-62 243.4 183 66.1
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.8e-62 242.7 214 56.1
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-62 242.7 196 54.1
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.1e-61 240.7 195 55.9
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 4.4e-60 235.3 192 57.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.7e-59 233.4 189 57.1
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.9e-59 232.6 215 53.5
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 3.8e-59 232.3 167 62.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.4e-58 229.6 225 48.9
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-56 223.8 244 46.3
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.7e-56 223.4 159 67.3
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.6e-52 209.5 205 49.8
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 3.8e-51 205.7 188 46.3
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.9e-50 203.4 230 45.2
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 5.1e-48 195.3 121 67.8
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.0e-44 183.3 209 46.9
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.6e-44 183.0 186 47.8
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 7.6e-44 181.4 175 46.9
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.0e-43 181.0 202 47.0
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 4.9e-43 178.7 248 40.7
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 6.5e-43 178.3 108 74.1
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.5e-42 176.4 108 70.4
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 7.1e-42 174.9 136 52.2
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 9.3e-42 174.5 191 39.8
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.2e-28 131.0 164 42.1
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.9e-26 123.6 107 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 5.1e-24 115.5 80 56.2
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.0e-19 101.3 63 60.3
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.1e-18 97.8 83 51.8
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.4e-18 97.4 87 52.9
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.9e-18 97.1 93 51.6
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.2e-18 95.1 99 46.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.6e-17 94.0 96 46.9
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.5e-15 87.4 97 50.5
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.6e-15 86.7 133 42.1
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.4e-15 85.9 50 76.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 7.4e-15 85.1 97 51.5
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-13 81.3 44 70.5
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.0e-12 77.0 77 48.1
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.6e-12 76.6 60 51.7
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.6e-12 76.6 52 65.4
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.1e-10 71.2 51 62.7
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 5.5e-10 68.9 121 33.9
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.7e-09 66.6 34 70.6
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 2.7e-09 66.6 156 28.2
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.6e-09 66.2 82 46.3
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.3e-08 63.5 52 61.5
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 3.3e-07 59.7 34 67.6


User provided reference genes

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