Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 6.5e-117 424.1 216 100.0
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 1.4e-108 396.4 216 94.4
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.4e-108 396.4 216 94.4
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.7e-105 384.4 216 93.1
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.8e-95 352.8 192 95.3
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.7e-89 331.3 181 93.9
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.4e-82 310.1 214 78.5
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 3.1e-79 298.9 216 75.0
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 4.1e-79 298.5 215 74.9
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.0e-78 296.2 217 74.7
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 3.5e-78 295.4 210 76.7
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 5.9e-78 294.7 218 74.3
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 7.7e-78 294.3 204 76.0
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 3.3e-76 288.9 197 76.6
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 9.5e-76 287.3 197 76.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.6e-75 286.6 220 72.7
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.0e-74 283.9 218 72.9
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 5.7e-73 278.1 218 70.6
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 1.7e-72 276.6 194 75.3
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.2e-72 276.2 205 71.7
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 1.8e-71 273.1 205 70.7
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.4e-71 272.7 177 80.2
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 3.2e-71 272.3 216 68.1
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 3.2e-71 272.3 206 71.8
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 3.2e-71 272.3 212 69.3
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 2.0e-70 269.6 206 69.4
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 4.6e-70 268.5 207 69.6
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 5.9e-70 268.1 202 71.8
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.0e-69 267.3 212 70.3
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 2.3e-69 266.2 208 67.3
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 3.9e-69 265.4 216 68.1
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 5.0e-69 265.0 222 65.8
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 8.6e-69 264.2 199 67.3
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 8.6e-69 264.2 207 68.6
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 8.6e-69 264.2 216 66.2
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 5.6e-68 261.5 190 71.1
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 7.3e-68 261.2 216 67.6
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 7.3e-68 261.2 212 68.4
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 7.3e-68 261.2 200 68.5
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 9.5e-68 260.8 180 77.8
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.1e-67 259.6 217 66.8
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 2.8e-67 259.2 178 77.5
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.2e-67 258.1 200 67.5
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 2.3e-66 256.1 220 65.0
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 3.1e-66 255.8 212 62.7
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 8.9e-66 254.2 206 66.0
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 2.0e-65 253.1 193 70.5
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 2.6e-65 252.7 208 66.8
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 4.4e-65 251.9 229 61.6
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 4.4e-65 251.9 210 66.7
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 9.8e-65 250.8 203 69.0
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 2.2e-64 249.6 223 61.4
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 2.9e-64 249.2 203 64.5
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 3.7e-64 248.8 197 67.5
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.4e-63 246.9 206 64.6
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.4e-63 246.9 198 63.6
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.9e-63 246.5 207 65.7
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.4e-63 246.1 217 64.1
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 2.4e-63 246.1 207 63.8
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 5.4e-63 245.0 149 85.2
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 9.2e-63 244.2 225 62.2
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 9.2e-63 244.2 216 63.0
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 9.2e-63 244.2 193 69.9
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 9.2e-63 244.2 210 63.3
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.2e-62 243.8 205 63.4
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.2e-62 243.8 234 60.7
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.2e-62 243.8 231 59.7
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 2.0e-62 243.0 204 65.2
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.0e-62 243.0 197 62.9
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 3.5e-62 242.3 225 62.7
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 3.5e-62 242.3 223 62.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 3.5e-62 242.3 225 62.7
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 3.5e-62 242.3 210 62.9
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 6.0e-62 241.5 177 71.2
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 7.8e-62 241.1 208 63.0
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 7.8e-62 241.1 216 62.5
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 7.8e-62 241.1 178 69.7
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.0e-61 240.7 208 62.0
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.3e-61 240.4 211 61.6
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 1.7e-61 240.0 225 61.8
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 3.0e-61 239.2 221 61.5
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 3.9e-61 238.8 203 64.5
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.1e-60 237.3 213 62.4
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-60 236.9 212 63.7
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.9e-60 236.5 203 65.5
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 2.5e-60 236.1 208 63.9
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 3.3e-60 235.7 209 63.6
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.3e-60 235.7 222 61.3
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 3.3e-60 235.7 218 62.8
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.3e-60 235.7 222 61.3
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 3.3e-60 235.7 218 62.8
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 4.3e-60 235.3 221 62.0
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 4.3e-60 235.3 150 79.3
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 7.3e-60 234.6 163 75.5
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 9.5e-60 234.2 181 71.3
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.6e-59 233.4 198 64.6
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 2.1e-59 233.0 193 64.8
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 2.8e-59 232.6 163 75.5
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 2.8e-59 232.6 208 61.5
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 3.6e-59 232.3 220 61.8
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.4e-58 230.3 214 61.2
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.4e-58 230.3 217 59.9
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 1.8e-58 229.9 172 72.1
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 6.8e-58 228.0 199 63.8
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.2e-57 227.3 207 60.9
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 3.4e-57 225.7 206 62.1
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.7e-54 216.1 176 67.0
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 7.8e-54 214.5 204 61.8
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 7.8e-54 214.5 204 61.8
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.0e-53 214.2 139 76.3
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 3.9e-53 212.2 167 70.7
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 5.1e-53 211.8 161 73.3
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 5.6e-52 208.4 205 59.0
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.4e-50 203.8 140 76.4
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 2.0e-49 199.9 186 61.8
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 3.4e-49 199.1 195 62.1
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 4.4e-49 198.7 210 56.7
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 1.3e-48 197.2 210 55.7
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 8.6e-45 184.5 181 55.8
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 9.6e-44 181.0 126 73.8
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.8e-42 176.8 131 69.5
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 4.4e-41 172.2 150 62.0
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 5.8e-41 171.8 150 61.3
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 9.9e-41 171.0 133 66.9
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 6.4e-40 168.3 200 51.0
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 1.9e-39 166.8 124 64.5
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 7.1e-39 164.9 216 49.5
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.3e-34 148.7 125 60.0
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 7.6e-33 144.8 147 57.8
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 2.4e-31 139.8 148 54.7
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.2e-31 139.0 203 42.9
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.6e-30 137.1 131 61.8
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 2.2e-24 116.7 76 82.9
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 6.7e-21 105.1 68 75.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 6.7e-21 105.1 68 75.0
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.0e-18 95.9 70 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.3e-16 90.9 67 71.6
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 1.8e-10 70.5 45 77.8
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 3.4e-09 66.2 131 35.1


User provided reference genes

Program Settings