Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 9.8e-52 206.5 100 100.0
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 7.3e-31 137.1 72 87.5
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.6e-30 136.0 72 86.1
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.1e-30 135.6 72 86.1
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.8e-30 135.2 73 86.3
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 9.0e-29 130.2 64 93.8
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 6.4e-27 124.0 66 83.3
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.6e-25 119.4 66 81.8
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.3e-24 116.3 70 72.9
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.7e-24 115.9 68 76.5
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 2.3e-24 115.5 71 74.6
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.3e-24 115.5 72 72.2
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 3.0e-24 115.2 71 74.6
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 3.0e-24 115.2 68 75.0
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 3.9e-24 114.8 68 76.5
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 5.1e-24 114.4 74 68.9
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 6.6e-24 114.0 72 70.8
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 1.1e-23 113.2 72 72.2
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.1e-23 113.2 70 72.9
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 1.5e-23 112.8 75 66.7
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.5e-23 112.8 72 70.8
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 1.9e-23 112.5 72 70.8
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 2.5e-23 112.1 68 73.5
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.5e-23 112.1 67 71.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.3e-23 111.7 70 72.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 3.3e-23 111.7 70 72.9
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 3.3e-23 111.7 65 76.9
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.3e-23 111.7 72 69.4
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 4.3e-23 111.3 70 72.9
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.6e-23 110.9 72 69.4
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.6e-23 110.9 72 69.4
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 5.6e-23 110.9 72 69.4
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 7.3e-23 110.5 68 70.6
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 7.3e-23 110.5 72 69.4
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 9.6e-23 110.2 70 71.4
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 9.6e-23 110.2 70 71.4
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.6e-23 110.2 72 69.4
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 9.6e-23 110.2 68 73.5
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 9.6e-23 110.2 72 69.4
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 1.3e-22 109.8 70 70.0
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.3e-22 109.8 74 66.2
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.3e-22 109.8 72 72.2
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.3e-22 109.8 71 69.0
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.3e-22 109.8 68 72.1
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.3e-22 109.8 76 65.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 1.6e-22 109.4 70 70.0
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.6e-22 109.4 70 70.0
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.6e-22 109.4 70 67.1
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.1e-22 109.0 70 70.0
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 2.1e-22 109.0 70 70.0
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.1e-22 109.0 68 72.1
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 2.1e-22 109.0 65 75.4
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 2.1e-22 109.0 72 68.1
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 2.8e-22 108.6 68 67.6
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.8e-22 108.6 72 69.4
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 4.8e-22 107.8 71 67.6
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 6.2e-22 107.5 68 70.6
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 6.2e-22 107.5 71 67.6
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 6.2e-22 107.5 71 70.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 8.1e-22 107.1 65 70.8
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 8.1e-22 107.1 71 69.0
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.4e-21 106.3 64 73.4
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.4e-21 106.3 63 73.0
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.8e-21 105.9 72 70.8
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.8e-21 105.9 70 67.1
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.8e-21 105.9 71 66.2
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.8e-21 105.9 71 69.0
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.8e-21 105.9 71 66.2
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.4e-21 105.5 70 68.6
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 3.1e-21 105.1 68 69.1
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 3.1e-21 105.1 68 69.1
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 3.1e-21 105.1 65 69.2
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 4.0e-21 104.8 71 66.2
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 4.0e-21 104.8 71 66.2
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 4.0e-21 104.8 71 66.2
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 4.0e-21 104.8 71 66.2
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 4.0e-21 104.8 65 70.8
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 5.3e-21 104.4 64 73.4
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.9e-21 104.0 62 74.2
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 9.0e-21 103.6 69 68.1
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 1.5e-20 102.8 64 71.9
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.5e-20 102.8 64 71.9
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 2.0e-20 102.4 56 80.4
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.0e-20 102.4 57 78.9
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 2.0e-20 102.4 57 78.9
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 2.6e-20 102.1 68 67.6
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.4e-20 101.7 57 77.2
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 4.5e-20 101.3 69 63.8
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.5e-20 101.3 65 67.7
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 9.9e-20 100.1 64 70.3
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 3.8e-19 98.2 57 71.9
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.1e-18 96.7 62 72.6
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 5.4e-18 94.4 64 67.2
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 7.1e-18 94.0 71 62.0
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 9.3e-18 93.6 70 58.6
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 9.3e-18 93.6 56 69.6
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 7.9e-17 90.5 53 69.8
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.8e-16 89.4 64 56.2
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 6.7e-16 87.4 62 59.7
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 3.3e-15 85.1 68 61.8
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 1.3e-14 83.2 65 63.1
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.6e-14 82.8 69 55.1
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.6e-14 82.8 50 76.0
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.1e-14 82.4 68 61.8
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 6.2e-14 80.9 45 73.3
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 6.2e-14 80.9 53 66.0
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 6.2e-14 80.9 45 73.3
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 6.2e-14 80.9 45 73.3
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 1.8e-13 79.3 45 73.3
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 4.0e-13 78.2 61 59.0
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 5.8e-12 74.3 61 59.0
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.0e-11 73.6 64 45.3
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 2.9e-11 72.0 66 50.0
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 4.2e-10 68.2 60 51.7
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.1e-09 65.9 62 50.0
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.5e-07 58.9 56 51.8


User provided reference genes

Program Settings