Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.0e-122 443.4 211 100.0
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.2e-70 270.4 188 72.3
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.3e-69 266.9 188 71.8
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.3e-69 266.9 188 71.8
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 6.4e-69 264.6 188 71.3
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.7e-66 256.5 188 68.6
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 3.9e-66 255.4 188 68.6
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.9e-65 253.1 188 67.0
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 2.5e-65 252.7 188 67.0
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 2.5e-65 252.7 188 68.1
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.5e-65 252.7 188 67.0
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 3.3e-65 252.3 188 66.5
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 4.3e-65 251.9 188 66.5
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 5.6e-65 251.5 188 67.6
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.3e-65 251.1 188 66.5
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 9.6e-65 250.8 185 68.6
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 2.1e-64 249.6 188 66.5
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.1e-64 249.6 188 66.5
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.8e-64 249.2 188 67.6
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 3.6e-64 248.8 188 67.0
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 3.6e-64 248.8 190 66.8
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 3.6e-64 248.8 188 68.1
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 3.6e-64 248.8 188 66.5
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 6.2e-64 248.1 188 67.0
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.2e-64 248.1 188 66.0
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 8.1e-64 247.7 188 67.0
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 8.1e-64 247.7 188 67.6
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.1e-63 247.3 189 65.1
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.1e-63 247.3 189 65.6
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.8e-63 246.5 189 65.1
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 1.8e-63 246.5 188 66.5
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.8e-63 246.5 188 66.0
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.4e-63 246.1 188 66.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 3.1e-63 245.7 188 66.0
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.1e-63 245.7 188 65.4
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.1e-63 245.7 188 66.5
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 4.0e-63 245.4 188 65.4
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.9e-63 244.6 188 65.4
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 6.9e-63 244.6 189 65.6
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 6.9e-63 244.6 188 66.0
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 6.9e-63 244.6 188 65.4
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 9.0e-63 244.2 188 66.5
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.2e-62 243.8 188 66.5
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.5e-62 243.4 188 64.9
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.0e-62 243.0 188 64.9
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.0e-62 243.0 188 64.9
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.0e-62 243.0 188 64.9
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 2.6e-62 242.7 189 66.1
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.6e-62 242.7 188 64.4
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 4.5e-62 241.9 189 64.0
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 5.8e-62 241.5 189 64.0
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 5.8e-62 241.5 188 64.4
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 7.6e-62 241.1 188 64.4
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 7.6e-62 241.1 188 63.8
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.3e-61 240.4 189 63.0
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 1.3e-61 240.4 188 63.8
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.3e-61 240.4 188 63.8
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.3e-61 240.4 188 64.4
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.3e-61 240.4 188 64.4
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.7e-61 240.0 188 63.8
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.7e-61 240.0 190 62.1
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 2.2e-61 239.6 188 63.8
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.2e-61 239.6 188 63.3
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 2.2e-61 239.6 189 64.6
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 3.8e-61 238.8 188 62.8
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 4.9e-61 238.4 188 64.4
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 6.4e-61 238.0 188 63.8
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 6.4e-61 238.0 188 63.8
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 8.4e-61 237.7 189 64.0
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.1e-60 237.3 188 63.8
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.1e-60 237.3 188 63.8
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.1e-60 237.3 188 63.8
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.4e-60 236.9 190 61.6
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.9e-60 236.5 188 63.3
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.9e-60 236.5 188 63.3
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 2.4e-60 236.1 188 63.8
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 3.2e-60 235.7 185 63.2
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 7.1e-60 234.6 188 64.4
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 9.3e-60 234.2 188 62.2
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 9.3e-60 234.2 189 64.6
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.2e-59 233.8 188 62.8
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.2e-59 233.8 190 64.2
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.1e-59 233.0 188 61.2
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 2.1e-59 233.0 190 64.2
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 4.6e-59 231.9 188 61.7
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 4.6e-59 231.9 188 62.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 4.6e-59 231.9 188 62.2
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 4.6e-59 231.9 188 61.7
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 6.0e-59 231.5 188 61.7
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 6.0e-59 231.5 189 61.4
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 7.9e-59 231.1 189 62.4
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 7.9e-59 231.1 188 62.2
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 1.8e-58 229.9 188 62.2
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.9e-58 228.8 188 62.8
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 1.1e-57 227.3 188 62.2
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.6e-56 223.4 192 62.0
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 6.2e-56 221.5 188 59.0
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.1e-55 220.7 188 58.0
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 5.3e-55 218.4 188 58.5
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 5.3e-55 218.4 188 59.0
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 6.9e-55 218.0 188 56.4
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.5e-54 216.9 192 61.5
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 2.0e-54 216.5 190 57.9
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.9e-52 209.9 190 56.8
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.1e-49 200.7 103 93.2
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 7.4e-49 198.0 189 54.0
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 9.6e-49 197.6 189 54.0
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.2e-46 190.7 190 52.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 3.4e-46 189.1 184 52.7
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 5.0e-45 185.3 103 83.5
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 7.1e-44 181.4 108 78.7
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 9.3e-44 181.0 103 83.5
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 3.5e-43 179.1 103 80.6
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.8e-42 176.8 200 46.5
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 3.0e-42 176.0 188 49.5
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.9e-41 173.3 103 81.6
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 9.0e-39 164.5 190 46.8
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.3e-34 149.8 102 70.6
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.4e-31 139.8 245 39.6
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 6.5e-29 131.7 184 41.3
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.4e-23 114.0 103 58.3
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 1.2e-22 110.9 64 78.1
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 2.7e-19 99.8 64 70.3
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 6.5e-13 78.6 46 76.1
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 4.2e-12 75.9 51 68.6
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 2.6e-09 66.6 58 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.8e-08 62.4 103 32.0


User provided reference genes

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