Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 7.0e-165 583.9 307 100.0
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 4.0e-152 541.6 308 87.3
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 8.8e-152 540.4 308 87.0
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.8e-150 535.4 308 86.4
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 8.5e-147 523.9 309 88.7
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.5e-143 513.1 310 87.1
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.9e-138 496.1 262 88.5
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 4.3e-138 495.0 303 79.5
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 5.6e-138 494.6 262 89.3
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 4.7e-137 491.5 302 79.1
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.3e-136 489.2 310 78.1
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.6e-135 485.7 262 86.3
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 4.4e-135 485.0 262 88.2
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 4.4e-135 485.0 308 76.9
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 5.7e-135 484.6 303 78.5
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.5e-135 484.2 262 85.9
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.3e-134 483.4 304 78.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.7e-134 483.0 312 76.6
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.9e-134 482.3 262 85.5
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 2.9e-134 482.3 303 77.9
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 4.9e-134 481.5 261 87.0
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 1.4e-133 479.9 303 77.2
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 2.4e-133 479.2 308 77.3
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.4e-133 479.2 304 78.3
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 3.2e-133 478.8 308 77.3
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 7.0e-133 477.6 306 77.1
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 7.0e-133 477.6 306 77.1
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.2e-132 476.9 307 76.5
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.6e-132 476.5 262 84.7
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 2.7e-132 475.7 254 88.6
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 4.6e-132 474.9 262 85.1
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 5.9e-132 474.6 255 87.1
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 7.8e-132 474.2 304 75.7
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.0e-131 473.8 261 84.7
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.0e-131 473.8 314 73.2
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.7e-131 473.0 269 83.3
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 2.3e-131 472.6 262 85.1
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.0e-131 472.2 263 85.2
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 3.9e-131 471.9 262 84.7
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 6.6e-131 471.1 262 84.7
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 8.6e-131 470.7 262 85.1
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.5e-130 469.2 255 84.7
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 5.6e-130 468.0 263 85.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 5.6e-130 468.0 263 83.7
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 9.5e-130 467.2 262 84.4
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.2e-129 466.8 303 76.2
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 2.1e-129 466.1 307 78.2
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.8e-129 465.7 262 83.6
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.4e-128 463.4 261 83.1
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 1.8e-128 463.0 262 82.8
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 1.8e-128 463.0 303 74.3
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 4.0e-128 461.8 262 82.4
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 5.2e-128 461.5 261 82.0
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 6.8e-128 461.1 262 82.8
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.8e-128 461.1 304 75.3
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 6.8e-128 461.1 261 83.9
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 6.8e-128 461.1 262 82.8
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 8.9e-128 460.7 262 82.8
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 8.9e-128 460.7 261 81.2
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 1.2e-127 460.3 310 72.9
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 2.0e-127 459.5 306 76.5
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.4e-127 458.4 262 82.4
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 5.8e-127 458.0 261 81.6
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 9.8e-127 457.2 261 80.8
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 2.2e-126 456.1 319 72.4
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.9e-126 455.7 302 73.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.9e-126 455.7 302 73.8
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.4e-125 453.4 319 71.8
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 1.9e-125 453.0 243 86.4
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 1.9e-125 453.0 243 86.4
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.9e-125 453.0 262 80.5
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.4e-125 452.6 261 82.4
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 3.2e-125 452.2 319 71.5
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 7.0e-125 451.1 308 72.4
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 9.2e-125 450.7 308 72.4
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.6e-124 449.9 262 79.8
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 2.0e-124 449.5 262 81.3
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 2.0e-124 449.5 243 86.0
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 3.5e-124 448.7 262 80.5
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 6.0e-124 448.0 319 71.5
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 3.0e-123 445.7 262 79.8
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 3.9e-123 445.3 262 79.4
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.1e-122 443.7 262 80.2
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.5e-122 443.4 262 80.2
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.5e-122 443.4 261 80.1
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.9e-122 443.0 305 69.8
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 3.3e-122 442.2 262 79.8
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.3e-122 441.8 262 79.4
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 7.3e-122 441.0 262 78.6
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 9.5e-122 440.7 262 77.1
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 3.6e-121 438.7 243 84.4
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 8.9e-120 434.1 283 80.6
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.2e-119 433.7 259 76.8
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 3.4e-119 432.2 263 79.1
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.7e-115 419.9 304 70.1
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.7e-115 419.9 252 77.8
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 6.8e-112 407.9 261 75.5
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 6.0e-108 394.8 219 86.8
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.2e-105 387.1 261 69.3
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 3.6e-105 385.6 261 69.7
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.5e-103 380.2 259 68.3
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 2.6e-103 379.4 261 66.3
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 2.1e-100 369.8 256 68.0
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 8.7e-99 364.4 238 76.5
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.5e-98 363.6 190 91.1
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 3.3e-98 362.5 313 58.8
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.1e-96 357.5 192 88.5
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.5e-95 353.6 236 79.7
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.3e-91 340.5 190 84.7
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 8.7e-91 337.8 192 81.2
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 4.3e-90 335.5 192 80.7
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.6e-87 326.2 263 60.8
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.9e-85 320.1 177 84.2
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.4e-85 319.7 256 61.3
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.6e-84 317.0 187 81.8
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.3e-83 313.2 224 67.9
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 3.3e-82 309.3 240 60.4
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.7e-78 297.0 208 72.6
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 2.2e-70 270.0 188 72.3
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 3.0e-67 259.6 256 51.6
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 4.5e-63 245.7 137 83.9
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.1e-60 236.9 259 51.7
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 5.5e-37 159.1 85 85.9
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.6e-36 157.5 274 36.9
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 3.4e-34 149.8 117 59.8
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 9.5e-29 131.7 64 93.8
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.4e-24 117.1 321 29.3
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 6.6e-22 109.0 65 76.9
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 8.0e-20 102.1 280 31.4
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 1.1e-16 91.7 104 53.8
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.3e-14 84.7 59 69.5


User provided reference genes

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