Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1582.4 785 100.0
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1486.9 785 93.8
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1466.4 822 89.4
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1453.3 826 88.5
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1402.9 782 87.9
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1315.8 778 82.1
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1315.8 780 82.8
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1312.0 780 81.8
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1307.4 780 81.5
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1303.5 781 81.2
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1301.6 775 80.6
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1299.3 773 80.9
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1297.0 776 81.3
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1294.3 787 80.6
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1293.9 777 80.8
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1278.1 769 80.9
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1274.6 769 80.6
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1274.2 769 80.6
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1271.1 777 79.8
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1267.3 778 79.4
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1266.1 777 79.3
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1265.8 819 75.1
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1263.4 772 80.3
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1260.7 776 78.7
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1258.4 773 78.7
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1256.5 774 78.8
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1251.5 774 78.9
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1251.1 772 79.7
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1250.0 755 81.3
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1246.9 889 71.9
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1244.6 780 78.3
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1243.8 696 89.5
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1241.1 771 77.6
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1238.0 771 78.0
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1236.9 771 77.4
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1233.4 781 77.5
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1232.6 770 77.7
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1232.2 774 77.9
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1231.9 764 79.1
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1229.9 773 76.2
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1229.2 771 77.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1228.4 771 76.5
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1226.1 773 76.6
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1224.2 756 79.0
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1224.2 775 76.4
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1223.8 766 77.4
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1220.7 775 76.9
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1220.3 770 75.8
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1219.9 774 76.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1216.4 775 75.7
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1211.4 770 76.1
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1203.3 770 75.7
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1201.0 775 75.2
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1197.2 784 75.6
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1195.3 771 74.1
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1194.1 772 74.7
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1191.8 771 74.3
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1189.9 773 74.1
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1189.5 783 74.6
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1188.3 771 73.9
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1187.2 773 74.1
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1186.4 771 74.2
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1185.2 773 73.9
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1184.5 782 74.7
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1182.9 773 73.9
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1178.7 771 74.3
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1177.5 771 73.5
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1176.8 771 73.8
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1176.8 782 73.7
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1174.8 775 74.8
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1171.8 771 73.5
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1170.6 771 73.2
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1169.1 771 74.4
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1164.1 771 73.2
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1159.8 776 73.2
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1157.1 677 82.1
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1155.6 774 72.7
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1148.7 782 72.8
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1148.3 776 73.1
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1147.5 781 71.7
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1135.6 749 73.4
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 0.0e+00 1133.2 778 75.1
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 779 70.7
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1125.2 770 71.2
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1121.3 781 70.6
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 0.0e+00 1119.8 698 77.9
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1117.1 784 70.2
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 766 72.2
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1113.2 776 70.0
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1105.1 779 68.9
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 0.0e+00 1096.6 757 72.4
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1095.1 736 74.6
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1084.7 779 68.8
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 6.4e-311 1070.5 786 67.8
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 3.2e-307 1058.1 663 77.1
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.2e-306 1056.2 741 71.5
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 6.7e-297 1023.8 752 68.5
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 5.3e-294 1014.2 773 64.9
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 3.3e-288 995.0 745 65.9
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 1.7e-284 982.6 770 62.9
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 5.0e-284 981.1 752 66.6
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.9e-283 979.2 770 64.0
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 4.1e-278 961.4 633 75.7
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 7.0e-278 960.7 763 63.2
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.5e-277 958.4 661 72.8
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 8.3e-255 884.0 678 66.2
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 2.0e-253 879.4 532 80.3
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 2.7e-253 879.0 711 62.2
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 8.6e-252 874.0 561 74.7
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 8.6e-252 874.0 647 67.4
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 1.5e-243 846.7 511 79.1
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 5.6e-227 791.6 761 56.1
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 3.8e-199 699.1 444 76.4
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 5.0e-199 698.7 446 75.3
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.5e-158 564.3 350 76.0
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 4.5e-152 542.7 374 73.5
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.5e-150 537.7 611 50.1
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 8.6e-127 458.8 272 82.4
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.6e-126 456.1 346 63.6
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 3.8e-106 390.2 249 74.3
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 3.5e-96 357.1 260 67.3
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 6.7e-87 326.2 260 70.0
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.6e-85 321.6 360 50.3
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.4e-81 308.5 266 63.2
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.1e-76 292.4 184 75.0
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 7.2e-73 279.6 252 61.1
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.1e-68 263.8 162 78.4
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.5e-67 261.9 214 64.5
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.4e-63 248.8 144 81.9
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 5.7e-62 243.4 222 54.1
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.7e-62 242.7 144 79.2
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 8.0e-48 196.4 156 64.7
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 5.7e-46 190.3 117 81.2
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.7e-45 188.7 112 79.5
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 2.2e-45 188.3 107 82.2
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.7e-45 187.6 112 79.5
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 6.3e-45 186.8 109 80.7
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 8.3e-45 186.4 148 62.8
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-44 186.0 207 48.8
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.3e-39 168.3 87 93.1
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.0e-39 167.5 101 77.2
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.2e-38 166.0 119 68.1
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.7e-37 161.0 108 67.6
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 4.1e-36 157.5 85 87.1
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.3e-34 151.8 94 78.7
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 3.6e-32 144.4 95 69.5
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.2e-30 139.4 86 75.6
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-30 139.0 104 68.3
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-30 139.0 104 68.3
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.6e-30 138.3 104 68.3
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.9e-29 134.8 90 72.2
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-28 132.9 86 70.9
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.4e-28 132.5 105 63.8
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.2e-28 129.8 221 38.5
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.6e-26 123.6 221 37.6
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 3.6e-24 117.9 72 79.2
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 6.2e-24 117.1 74 73.0
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 1.3e-21 109.4 86 62.8
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.9e-20 105.5 163 41.1
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 3.5e-19 101.3 120 48.3
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.7e-13 82.4 58 65.5
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 3.7e-13 81.3 45 77.8
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 6.0e-11 73.9 37 78.4
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 1.3e-10 72.8 169 34.9
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-10 72.8 63 58.7
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 3.1e-07 61.6 29 82.8
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.6e-06 58.5 44 59.1
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 4.4e-06 57.8 51 56.9
arahy.Tifrunner.gnm1.ann1.H1NXHC Arachis hypogaea HOM05D000009 ORTHO05D000008 7.6e-06 57.0 38 71.1


User provided reference genes

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