Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-68 263.1 126 100.0
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 3.2e-68 261.5 126 99.2
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.2e-68 261.5 126 99.2
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.2e-67 259.6 125 98.4
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.1e-67 258.8 125 98.4
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 9.8e-65 250.0 126 94.4
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.3e-64 249.6 125 94.4
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.6e-62 242.7 126 90.5
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 2.0e-62 242.3 126 89.7
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 2.0e-62 242.3 126 93.7
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 92.1
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 5.9e-62 240.7 126 90.5
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 88.1
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 88.1
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 89.7
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 89.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 89.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 88.9
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 88.9
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 90.5
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.8e-61 238.0 125 88.8
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 3.8e-61 238.0 126 87.3
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 90.5
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.5e-60 236.1 126 87.3
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 88.1
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 88.1
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 86.5
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 89.7
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 3.3e-60 235.0 126 88.1
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 86.5
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 87.3
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 87.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 87.3
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 87.3
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 86.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 88.9
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 7.2e-60 233.8 127 89.0
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 89.7
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 9.5e-60 233.4 127 88.2
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 1.2e-59 233.0 126 86.5
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 85.7
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 86.5
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 86.5
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.8e-59 231.9 125 86.4
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 3.6e-59 231.5 125 86.4
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 4.7e-59 231.1 125 85.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 4.7e-59 231.1 125 85.6
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 87.3
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 87.3
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 86.5
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 87.3
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.0e-59 230.3 124 87.1
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.0e-58 229.9 124 86.3
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 85.7
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 86.5
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 85.7
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 87.3
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.4e-58 229.6 125 84.8
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 85.7
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 88.1
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 88.1
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 85.7
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 86.5
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 85.7
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.2e-57 226.5 124 85.5
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.5e-57 226.1 127 86.6
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 86.5
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 85.7
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.1
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 5.7e-57 224.2 127 84.3
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 7.5e-57 223.8 126 84.1
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 84.1
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 83.3
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 84.1
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 84.1
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.2e-56 222.2 126 84.1
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 84.1
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 84.1
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 83.3
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 6.4e-56 220.7 126 84.1
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 6.4e-56 220.7 140 76.4
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 8.3e-56 220.3 126 84.9
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 8.3e-56 220.3 126 84.1
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 81.7
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 83.3
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 1.8e-55 219.2 126 83.3
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 84.1
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 84.1
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.4e-55 218.8 126 84.1
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 84.1
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 3.2e-55 218.4 126 83.3
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 83.3
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 83.3
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 83.3
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 7.8e-54 213.8 126 81.7
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 81.7
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 3.9e-53 211.5 126 79.4
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 6.6e-53 210.7 114 86.0
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 77.8
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.1e-52 209.9 127 81.9
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 78.6
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.8e-51 205.3 126 79.4
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 8.0e-51 203.8 124 78.2
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.8e-50 202.6 107 89.7
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 8.9e-50 200.3 107 88.8
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.0e-49 199.1 112 84.8
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 2.6e-49 198.7 107 88.8
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 4.4e-49 198.0 107 87.9
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 5.8e-49 197.6 126 74.6
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 7.5e-49 197.2 126 73.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.3e-48 196.4 126 71.4
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 8.3e-48 193.7 107 85.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 5.4e-47 191.0 93 91.4
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 7.0e-47 190.7 107 86.9
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 7.0e-47 190.7 107 83.2
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 7.0e-47 190.7 107 85.0
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 9.2e-47 190.3 139 70.5
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.2e-46 189.9 107 82.2
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.6e-46 189.5 107 84.1
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 2.7e-46 188.7 94 90.4
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 2.7e-46 188.7 107 84.1
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 6.0e-46 187.6 126 69.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 5.0e-45 184.5 94 88.3
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.1e-44 183.3 104 83.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 9.5e-44 180.3 112 79.5
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 3.6e-43 178.3 107 82.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 1.1e-42 176.8 112 77.7
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 5.2e-42 174.5 112 75.0
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 6.4e-40 167.5 126 68.3
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 7.8e-38 160.6 124 66.1
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.0e-37 160.2 121 62.0
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 5.1e-37 157.9 102 66.7
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 6.2e-35 151.0 75 88.0
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-34 150.2 141 56.0
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 6.8e-34 147.5 126 62.7
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 5.8e-33 144.4 79 83.5
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.2e-31 137.1 91 75.8
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 2.1e-30 136.0 79 81.0
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 3.5e-30 135.2 66 92.4
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 6.0e-30 134.4 104 58.7
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.0e-29 133.7 75 85.3
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-29 133.3 67 89.6
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.0e-29 132.1 91 72.5
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 5.6e-28 127.9 93 73.1
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 5.6e-28 127.9 126 54.8
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 2.0e-25 119.4 75 74.7
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 5.8e-25 117.9 63 85.7
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 8.4e-24 114.0 97 61.9
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.9e-23 112.8 108 50.0
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.9e-20 102.8 72 72.2
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 2.5e-20 102.4 75 70.7
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.7e-16 89.7 119 44.5
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.4e-15 86.7 43 90.7
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 2.4e-15 85.9 79 50.6
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 3.8e-08 62.0 42 76.2
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 8.4e-08 60.8 45 66.7


User provided reference genes

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