Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 3.0e-31 137.9 69 100.0
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 8.9e-20 99.8 65 76.9
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.9e-17 92.0 65 69.2
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 1.7e-15 85.5 65 67.7
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.7e-15 85.5 65 67.7
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.3e-15 85.1 65 67.7
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 3.3e-14 81.3 65 60.0
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.8e-13 78.2 65 66.2
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 1.8e-12 75.5 65 60.0
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 2.4e-12 75.1 64 60.9
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 2.4e-12 75.1 66 57.6
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 3.1e-12 74.7 64 56.2
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 3.1e-12 74.7 68 58.8
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 4.0e-12 74.3 64 59.4
RcHm_v2.0_Chr3g0484351 Rosa chinensis HOM05D004802 ORTHO05D005591 5.3e-12 73.9 43 86.0
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 6.9e-12 73.6 64 59.4
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 6.9e-12 73.6 64 56.2
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 9.0e-12 73.2 67 59.7
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 2.0e-11 72.0 64 57.8
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.6e-11 71.6 67 62.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.4e-11 71.2 68 58.8
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.4e-11 71.2 66 56.1
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 4.5e-11 70.9 64 59.4
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 4.5e-11 70.9 65 58.5
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 7.6e-11 70.1 66 57.6
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 7.6e-11 70.1 67 56.7
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 7.6e-11 70.1 68 54.4
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 7.6e-11 70.1 64 56.2
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 7.6e-11 70.1 66 54.5
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 9.9e-11 69.7 65 55.4
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 1.7e-10 68.9 64 56.2
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 2.9e-10 68.2 67 55.2
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 2.9e-10 68.2 66 54.5
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 2.9e-10 68.2 67 55.2
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 2.9e-10 68.2 67 55.2
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 3.8e-10 67.8 67 56.7
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 3.8e-10 67.8 66 51.5
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 6.4e-10 67.0 53 58.5
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 8.4e-10 66.6 67 53.7
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 1.4e-09 65.9 56 58.9
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.9e-09 65.5 69 47.8
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.9e-09 65.5 67 53.7
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 2.4e-09 65.1 67 53.7
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 3.2e-09 64.7 68 51.5
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 9.3e-09 63.2 68 50.0
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 1.2e-08 62.8 64 53.1
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.6e-08 62.4 67 49.3
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.6e-08 62.4 67 52.2
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.6e-08 62.4 67 50.7
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.6e-08 62.4 66 57.6
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.1e-08 62.0 67 52.2
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 2.1e-08 62.0 67 52.2
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 2.1e-08 62.0 67 46.3
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 2.1e-08 62.0 64 50.0
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 2.1e-08 62.0 64 50.0
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.5e-08 61.2 67 49.3
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 4.6e-08 60.8 59 55.9
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 4.6e-08 60.8 64 56.2
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 6.0e-08 60.5 66 48.5
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 6.0e-08 60.5 66 50.0
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.0e-07 59.7 67 49.3
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.3e-07 59.3 70 47.1
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 1.8e-07 58.9 67 47.8
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 3.0e-07 58.2 55 58.2
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 3.0e-07 58.2 65 49.2
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 3.0e-07 58.2 68 48.5
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 5.1e-07 57.4 47 55.3
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 5.1e-07 57.4 45 57.8
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 6.7e-07 57.0 57 56.1
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 8.7e-07 56.6 67 47.8
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 8.7e-07 56.6 56 55.4
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 8.7e-07 56.6 67 49.3
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 8.7e-07 56.6 65 55.4
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.1e-06 56.2 69 46.4
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 1.1e-06 56.2 69 46.4
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.5e-06 55.8 66 47.0
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.9e-06 55.5 53 56.6
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 1.9e-06 55.5 66 45.5
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.9e-06 55.5 64 48.4
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 2.5e-06 55.1 67 44.8
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 2.5e-06 55.1 67 44.8
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 3.3e-06 54.7 64 50.0
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 4.3e-06 54.3 64 45.3
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 4.3e-06 54.3 66 45.5
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 5.6e-06 53.9 68 45.6
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 5.6e-06 53.9 69 43.5
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 9.6e-06 53.1 67 43.3
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 9.6e-06 53.1 34 67.6
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 9.6e-06 53.1 70 42.9
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 9.6e-06 53.1 71 39.4


User provided reference genes

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