Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 1.3e-37 161.8 84 100.0
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 4.7e-32 143.3 83 88.0
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 7.2e-25 119.4 84 71.4
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 1.6e-24 118.2 84 70.2
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.4e-23 115.2 84 69.0
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 4.0e-23 113.6 84 72.6
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 8.3e-21 105.9 84 64.3
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.1e-20 105.5 82 64.6
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.4e-20 105.1 82 67.1
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.8e-20 104.8 82 64.6
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 7.0e-20 102.8 79 67.1
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 1.6e-19 101.7 81 60.5
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 5.9e-19 99.8 81 65.4
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 7.8e-19 99.4 80 60.0
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.0e-18 99.0 77 64.9
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.7e-18 98.2 77 66.2
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.7e-18 98.2 80 62.5
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.9e-18 97.4 84 57.1
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 3.8e-18 97.1 80 63.8
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 3.8e-18 97.1 80 60.0
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.1e-17 95.5 82 57.3
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 1.5e-17 95.1 80 58.8
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 1.5e-17 95.1 80 60.0
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 3.3e-17 94.0 76 60.5
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 3.3e-17 94.0 84 54.8
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 5.6e-17 93.2 80 58.8
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 7.3e-17 92.8 80 57.5
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 7.3e-17 92.8 79 59.5
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.2e-16 92.0 81 53.1
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.2e-16 92.0 80 57.5
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 1.6e-16 91.7 83 51.8
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 1.6e-16 91.7 72 66.7
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.1e-16 91.3 80 57.5
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 2.1e-16 91.3 80 58.8
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 2.8e-16 90.9 82 53.7
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 2.8e-16 90.9 81 53.1
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.8e-16 90.9 79 58.2
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.8e-16 90.9 79 58.2
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.6e-16 90.5 78 59.0
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 4.7e-16 90.1 78 55.1
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 4.7e-16 90.1 84 53.6
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 4.7e-16 90.1 83 49.4
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 4.7e-16 90.1 83 49.4
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 6.1e-16 89.7 80 56.2
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 6.1e-16 89.7 79 54.4
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 8.0e-16 89.4 77 55.8
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 8.0e-16 89.4 82 51.2
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.0e-15 89.0 82 52.4
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 1.0e-15 89.0 82 52.4
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.0e-15 89.0 78 56.4
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.4e-15 88.6 82 52.4
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.3e-15 87.8 79 55.7
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.3e-15 87.8 82 50.0
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 6.8e-15 86.3 79 55.7
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 8.9e-15 85.9 82 53.7
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.5e-14 85.1 79 54.4
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 1.5e-14 85.1 80 56.2
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.0e-14 84.7 78 53.8
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.0e-14 84.7 79 54.4
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 2.0e-14 84.7 79 51.9
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.0e-14 84.7 80 52.5
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.6e-14 84.3 73 57.5
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 4.4e-14 83.6 78 50.0
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 5.8e-14 83.2 79 54.4
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 9.8e-14 82.4 79 53.2
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 1.3e-13 82.0 79 53.2
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 1.3e-13 82.0 79 54.4
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.3e-13 82.0 78 52.6
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.7e-13 81.6 81 49.4
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.7e-13 81.6 79 53.2
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 2.2e-13 81.3 79 50.6
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 2.9e-13 80.9 79 53.2
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.9e-13 80.9 77 50.6
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 3.7e-13 80.5 79 53.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 3.7e-13 80.5 78 51.3
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 3.7e-13 80.5 80 47.5
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 4.9e-13 80.1 81 48.1
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 8.3e-13 79.3 79 51.9
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 8.3e-13 79.3 79 51.9
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 1.1e-12 79.0 79 50.6
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.9e-12 78.2 81 46.9
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 3.2e-12 77.4 78 55.1
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 3.2e-12 77.4 81 46.9
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 4.1e-12 77.0 80 51.2
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 5.4e-12 76.6 77 50.6
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 7.0e-12 76.3 81 45.7
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.6e-11 75.1 79 48.1
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 2.0e-11 74.7 77 51.9
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.0e-11 74.7 84 50.0
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.0e-11 74.7 81 50.6
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 2.7e-11 74.3 78 46.2
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 2.7e-11 74.3 42 85.7
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 3.5e-11 73.9 82 43.9
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 6.0e-11 73.2 71 50.7
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 6.0e-11 73.2 49 67.3
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 7.8e-11 72.8 70 51.4
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.0e-10 72.4 74 50.0
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 1.0e-10 72.4 71 52.1
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 1.3e-10 72.0 81 46.9
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 1.3e-10 72.0 81 46.9
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 1.3e-10 72.0 79 45.6
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.3e-10 71.2 76 46.1
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 3.0e-10 70.9 69 50.7
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 3.0e-10 70.9 76 46.1
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 3.0e-10 70.9 73 47.9
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 3.0e-10 70.9 76 46.1
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.0e-10 70.9 77 46.8
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 5.0e-10 70.1 70 48.6
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 6.6e-10 69.7 48 70.8
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 8.6e-10 69.3 45 73.3
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 8.6e-10 69.3 72 47.2
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.1e-09 68.9 49 71.4
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.5e-09 68.6 78 41.0
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.3e-09 67.4 73 47.9
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.3e-09 67.4 80 50.0
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 7.3e-09 66.2 82 39.0
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 7.3e-09 66.2 45 71.1
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.2e-08 65.5 46 65.2
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.1e-08 64.7 50 62.0
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.1e-08 64.7 50 62.0
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 6.2e-08 63.2 80 43.8
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 6.2e-08 63.2 50 58.0
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.1e-07 62.4 49 61.2
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.8e-07 61.6 49 65.3
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 6.8e-07 59.7 40 62.5
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 5.8e-06 56.6 79 35.4


User provided reference genes

Program Settings