Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1662.1 869 100.0
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1509.2 869 89.5
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1508.0 869 89.4
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1505.7 869 89.5
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1501.1 869 89.6
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1374.0 870 82.9
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1360.1 870 82.2
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1266.1 868 74.3
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1244.2 868 73.3
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1241.1 755 86.0
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1221.5 869 71.7
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1219.5 869 71.8
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1206.4 870 72.5
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1205.3 869 71.1
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1183.7 869 72.3
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1179.9 869 70.7
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1178.7 869 70.3
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1178.3 869 70.2
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1177.5 869 70.2
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1177.2 835 72.3
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1159.1 869 70.5
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1158.7 869 68.5
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1157.5 870 69.9
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1157.5 869 69.9
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1152.9 869 70.3
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1151.0 869 69.7
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1147.9 869 67.7
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1147.9 869 68.1
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1145.6 869 69.3
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1144.8 869 68.6
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1142.1 869 67.4
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1140.2 869 69.3
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1139.0 866 67.9
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1138.3 866 68.1
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1137.5 869 68.8
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1132.9 871 67.7
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1124.8 870 69.0
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1121.7 869 68.7
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 0.0e+00 1111.7 868 66.7
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 0.0e+00 1107.8 873 66.7
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 0.0e+00 1104.7 869 67.3
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1103.2 873 66.4
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 0.0e+00 1098.2 868 66.2
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1090.5 886 65.8
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 0.0e+00 1089.7 871 66.1
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1083.6 875 64.8
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1081.6 869 65.6
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 4.2e-311 1071.2 869 64.6
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 5.4e-311 1070.8 875 64.3
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 1.0e-309 1066.6 826 66.6
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 3.8e-309 1064.7 867 64.5
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 5.0e-309 1064.3 868 64.4
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 6.3e-304 1047.3 868 63.9
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 8.2e-304 1047.0 864 63.3
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.1e-303 1046.6 882 63.4
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.1e-303 1046.6 864 63.4
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 7.0e-303 1043.9 863 63.5
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 1.5e-302 1042.7 878 63.7
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 1.4e-300 1036.2 873 62.7
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 3.2e-300 1035.0 873 62.7
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.2e-299 1033.1 854 62.6
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 1.0e-298 1030.0 863 62.1
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 7.4e-297 1023.8 849 63.3
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 2.8e-296 1021.9 875 62.1
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 2.8e-296 1021.9 873 61.6
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 3.7e-296 1021.5 873 62.3
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 6.3e-296 1020.8 916 59.7
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 1.4e-295 1019.6 872 61.7
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 1.4e-295 1019.6 872 61.7
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 3.5e-294 1015.0 874 61.3
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 7.7e-294 1013.8 874 61.3
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 5.0e-293 1011.1 876 62.2
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 3.3e-289 998.4 873 61.5
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 2.4e-287 992.3 873 62.0
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.0e-285 986.9 852 60.6
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 1.0e-282 976.9 880 60.2
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 8.3e-280 967.2 826 63.8
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 1.6e-278 963.0 756 68.3
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 2.7e-278 962.2 863 60.8
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 5.9e-278 961.1 878 58.0
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 7.7e-278 960.7 867 58.5
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 1.5e-276 956.4 803 63.1
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.2e-276 954.9 858 60.5
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 2.3e-274 949.1 832 60.7
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 5.6e-268 927.9 810 61.1
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 6.1e-267 924.5 853 59.3
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.7e-256 889.8 869 55.9
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 1.1e-255 887.1 811 59.6
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 8.6e-253 877.5 856 55.8
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 6.4e-248 861.3 867 53.4
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 8.3e-248 860.9 870 54.3
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 3.9e-245 852.0 652 69.3
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 2.1e-243 846.3 872 53.3
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.7e-237 826.6 870 51.4
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 3.9e-229 798.9 870 52.0
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 5.1e-229 798.5 811 54.7
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 9.3e-223 777.7 693 62.0
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 1.9e-199 700.3 759 50.6
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 4.8e-171 605.9 525 62.3
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 5.9e-161 572.4 729 46.9
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 2.1e-142 510.8 878 36.9
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 8.1e-142 508.8 441 59.9
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 9.8e-140 501.9 844 38.0
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 4.6e-129 466.5 857 36.9
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 2.7e-113 414.1 327 65.4
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 5.5e-98 363.2 1001 29.8
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 3.2e-58 231.1 189 67.2
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 6.4e-30 137.1 100 68.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 4.6e-28 131.0 93 66.7
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 2.6e-23 115.2 574 22.6
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 2.6e-23 115.2 589 24.3
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 1.6e-20 105.9 64 79.7
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 9.5e-18 96.7 65 69.2
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 4.7e-17 94.4 66 68.2
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.2e-15 89.7 53 77.4
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 8.4e-14 83.6 65 61.5
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.2e-12 79.7 57 66.7
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 6.0e-12 77.4 57 61.4
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 3.3e-10 71.6 105 45.7
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 5.2e-08 64.3 101 44.6
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 1.2e-07 63.2 612 22.1
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 1.5e-07 62.8 47 59.6
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 3.4e-07 61.6 43 62.8
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 9.9e-07 60.1 50 52.0


User provided reference genes

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