Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 7.0e-190 667.2 343 100.0
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 1.0e-177 626.7 346 94.5
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 5.9e-173 610.9 358 91.1
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 8.9e-169 597.0 377 86.2
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 1.7e-156 556.2 337 85.5
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 8.6e-156 553.9 337 84.6
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 8.6e-156 553.9 342 84.2
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.1e-149 532.7 303 92.4
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 2.4e-137 492.7 337 76.3
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 1.1e-134 483.8 335 74.3
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 8.7e-132 474.2 333 73.6
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 7.3e-131 471.1 346 71.4
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 7.3e-131 471.1 333 73.3
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 1.6e-130 469.9 337 70.3
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 4.0e-129 465.3 338 70.7
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 5.3e-129 464.9 371 66.8
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.7e-127 459.9 333 70.9
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 6.4e-127 458.0 342 70.5
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 8.4e-127 457.6 345 69.9
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 8.4e-127 457.6 338 69.8
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 8.4e-127 457.6 342 69.6
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.1e-126 457.2 331 72.2
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 9.3e-126 454.1 332 71.7
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 7.9e-125 451.1 341 69.2
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 1.3e-124 450.3 339 70.5
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 2.3e-124 449.5 334 71.3
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 3.9e-124 448.7 334 68.9
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 6.7e-124 448.0 334 70.7
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 6.7e-124 448.0 336 69.3
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 5.6e-123 444.9 334 70.1
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 9.6e-123 444.1 344 66.9
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 2.8e-122 442.6 343 67.9
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 1.8e-121 439.9 337 67.4
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 2.4e-121 439.5 344 66.6
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 3.1e-121 439.1 335 69.0
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 4.0e-121 438.7 339 69.0
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 5.3e-121 438.3 344 66.3
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 6.9e-121 438.0 335 68.7
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 1.2e-120 437.2 345 67.0
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 3.4e-120 435.6 339 66.7
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 1.7e-119 433.3 341 69.8
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.9e-119 432.6 327 70.3
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 8.4e-119 431.0 342 65.8
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 1.1e-118 430.6 341 66.3
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 3.2e-118 429.1 340 66.5
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 3.2e-118 429.1 329 66.0
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 4.2e-118 428.7 332 67.5
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 5.5e-118 428.3 349 66.2
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 5.5e-118 428.3 335 67.2
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 7.1e-118 427.9 334 66.8
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 7.1e-118 427.9 300 72.7
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 9.3e-118 427.6 349 66.2
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 3.5e-117 425.6 337 65.6
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 4.6e-117 425.2 340 67.1
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 6.0e-117 424.9 332 66.6
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 6.0e-117 424.9 332 66.6
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 6.0e-117 424.9 363 61.7
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 7.9e-117 424.5 339 67.0
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 1.8e-116 423.3 332 66.0
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 2.3e-116 422.9 332 65.7
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 2.3e-116 422.9 330 65.8
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 5.1e-116 421.8 334 66.2
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 6.7e-116 421.4 340 63.8
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 1.1e-115 420.6 340 65.6
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-115 420.2 335 67.8
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.5e-115 420.2 337 65.6
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 2.5e-115 419.5 336 63.1
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 3.1e-113 412.5 337 67.4
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 2.0e-112 409.8 301 70.8
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 4.5e-112 408.7 348 63.8
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.0e-111 407.5 335 65.1
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 4.9e-111 405.2 341 63.9
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.4e-110 403.7 337 65.9
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 1.4e-110 403.7 296 70.9
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 3.2e-110 402.5 337 66.2
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 1.6e-109 400.2 360 61.4
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.7e-109 399.4 349 64.5
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 4.6e-109 398.7 322 68.3
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 2.8e-106 389.4 322 64.0
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.9e-103 379.4 351 60.7
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 3.9e-100 369.0 331 60.1
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 6.7e-100 368.2 338 61.5
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 6.3e-98 361.7 335 58.5
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 1.1e-97 360.9 350 57.4
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.4e-96 355.9 276 66.3
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 6.5e-95 351.7 330 60.0
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 2.0e-91 340.1 276 65.6
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 2.6e-91 339.7 281 66.9
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 6.3e-90 335.1 323 58.8
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 9.1e-89 331.3 394 49.7
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 3.8e-87 325.9 266 65.0
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 6.5e-87 325.1 349 53.9
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 3.6e-85 319.3 251 68.5
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 4.8e-82 308.9 335 56.4
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 1.8e-81 307.0 233 68.2
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 9.4e-78 294.7 227 69.2
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 4.7e-77 292.4 249 64.3
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 1.4e-76 290.8 226 65.9
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 5.7e-75 285.4 347 49.3
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 6.3e-74 282.0 385 45.2
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 1.0e-71 274.6 322 49.7
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 2.2e-71 273.5 329 49.5
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 7.7e-64 248.4 179 68.2
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 7.7e-64 248.4 280 51.1
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 8.3e-58 228.4 251 53.0
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 1.4e-57 227.6 185 63.8
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 1.8e-57 227.3 185 66.5
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 4.1e-57 226.1 339 41.9
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 1.9e-49 200.7 266 48.9
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 6.8e-36 155.6 90 82.2
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 3.4e-27 126.7 76 78.9
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 2.4e-25 120.6 108 57.4
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 4.2e-25 119.8 87 70.1
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.6e-24 117.9 92 60.9
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 6.0e-24 115.9 87 69.0
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 5.6e-22 109.4 285 30.5
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 9.0e-20 102.1 60 76.7
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 9.0e-20 102.1 259 30.5
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 5.6e-14 82.8 204 31.9
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 1.8e-12 77.8 54 72.2
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 1.8e-12 77.8 54 72.2
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 1.2e-11 75.1 73 56.2
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 2.1e-08 64.3 45 68.9
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 5.1e-07 59.7 175 29.7
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 2.5e-06 57.4 241 28.6


User provided reference genes

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