Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0129321 Rosa chinensis HOM05D004083 ORTHO05D005029 1.4e-83 312.8 146 100.0
RcHm_v2.0_Chr7g0200711 Rosa chinensis HOM05D004083 ORTHO05D005029 3.5e-74 281.6 141 90.1
FvH4_5g00881 Fragaria vesca HOM05D004083 ORTHO05D005029 3.2e-59 231.9 141 70.2
FAN18G2457 Fragaria x ananassa HOM05D004083 ORTHO05D005029 3.2e-59 231.9 141 70.2
FAN04G0828 Fragaria x ananassa HOM05D004083 ORTHO05D005029 9.3e-59 230.3 141 70.2
FAN13G1062 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.6e-55 219.5 141 68.1
FAN24G2149 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.6e-55 219.5 141 68.1
FvH4_4g18280 Fragaria vesca HOM05D004083 ORTHO05D005029 1.1e-51 206.8 141 66.0
FAN12G2651 Fragaria x ananassa HOM05D004083 ORTHO05D005029 5.3e-38 161.4 132 57.6
RcHm_v2.0_Chr7g0183051 Rosa chinensis HOM05D004083 ORTHO05D005029 1.6e-34 149.8 140 48.6
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea HOM05D004083 ORTHO05D005029 4.4e-24 115.2 123 47.2
FvH4_5g13880 Fragaria vesca HOM05D004083 ORTHO05D005029 4.4e-24 115.2 146 38.4
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea HOM05D004083 ORTHO05D005029 1.7e-23 113.2 123 46.3
Lalb_Chr12g0197191 Lupinus albus HOM05D004083 ORTHO05D005029 4.8e-23 111.7 118 44.9
Ca_21778_v3 Cicer arietinum L. HOM05D004083 ORTHO05D005029 1.1e-22 110.5 118 45.8
Lalb_Chr13g0302881 Lupinus albus HOM05D004083 ORTHO05D005029 1.4e-22 110.2 118 43.2
Cpa.g.sc94.53 Carica papaya HOM05D004083 ORTHO05D005029 1.8e-22 109.8 122 43.4
Glyma.05G021300 Glycine max HOM05D004083 ORTHO05D005029 2.4e-22 109.4 118 43.2
ClCG06G015670 Citrullus lanatus HOM05D004083 ORTHO05D005029 3.1e-22 109.0 119 43.7
MELO3C017222.2 Cucumis melo HOM05D004083 ORTHO05D005029 3.1e-22 109.0 119 43.7
CsaV3_1G002890 Cucumis sativus L. HOM05D004083 ORTHO05D005029 3.1e-22 109.0 119 43.7
Glyma.17G078100 Glycine max HOM05D004083 ORTHO05D005029 3.1e-22 109.0 118 42.4
CiPaw.11G052900 Carya illinoinensis HOM05D004083 ORTHO05D005029 4.1e-22 108.6 118 43.2
Duzib205G0149 Durio zibethinus HOM05D004083 ORTHO05D005029 5.3e-22 108.2 118 45.8
MD14G1211500 Malus domestica HOM05D004083 ORTHO05D005029 5.3e-22 108.2 121 43.0
Medtr4g109510 Medicago truncatula HOM05D004083 ORTHO05D005029 5.3e-22 108.2 118 44.1
Lj4g0020958 Lotus japonicus HOM05D004083 ORTHO05D005029 7.0e-22 107.8 155 40.0
TPR.G2055 Trifolium pratense HOM05D004083 ORTHO05D005029 7.0e-22 107.8 118 44.9
MD06G1202400 Malus domestica HOM05D004083 ORTHO05D005029 1.2e-21 107.1 121 42.1
Manes.06G085000 Manihot esculenta HOM05D004083 ORTHO05D005029 1.2e-21 107.1 121 42.1
Psat0s3618g0080 Pisum sativum HOM05D004083 ORTHO05D005029 1.2e-21 107.1 143 39.9
Potri.009G018400 Populus trichocarpa HOM05D004083 ORTHO05D005029 1.5e-21 106.7 121 43.0
FAN13G2878 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.0e-21 106.3 121 42.1
Prupe.5G204600 Prunus persica HOM05D004083 ORTHO05D005029 2.0e-21 106.3 121 41.3
QL10p019423 Quercus lobata HOM05D004083 ORTHO05D005029 2.0e-21 106.3 149 39.6
Cfa019327 Carpinus fangiana HOM05D004083 ORTHO05D005029 3.4e-21 105.5 119 45.4
FvH4_5g13920 Fragaria vesca HOM05D004083 ORTHO05D005029 3.4e-21 105.5 121 42.1
FAN08G2807 Fragaria x ananassa HOM05D004083 ORTHO05D005029 3.4e-21 105.5 121 42.1
FAN18G2285 Fragaria x ananassa HOM05D004083 ORTHO05D005029 3.4e-21 105.5 121 42.1
Gohir.A12G182366 Gossypium hirsutum HOM05D004083 ORTHO05D005029 3.4e-21 105.5 148 42.6
Gohir.D12G185400 Gossypium hirsutum HOM05D004083 ORTHO05D005029 3.4e-21 105.5 120 45.8
Gorai.008G198800 Gossypium raimondii HOM05D004083 ORTHO05D005029 3.4e-21 105.5 120 45.8
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 4.5e-21 105.1 118 41.5
Sabra09G0010400 Salix brachista HOM05D004083 ORTHO05D005029 4.5e-21 105.1 121 42.1
Dinv22784 Davidia involucrata HOM05D004083 ORTHO05D005029 5.9e-21 104.8 118 45.8
Sed0001011 Sechium edule HOM05D004083 ORTHO05D005029 1.0e-20 104.0 119 41.2
Haze_07719 Corylus avellana HOM05D004083 ORTHO05D005029 1.3e-20 103.6 119 44.5
CANSAT80G2443 Cannabis sativa HOM05D004083 ORTHO05D005029 1.7e-20 103.2 97 45.4
SHI27062 Sapria himalayana HOM05D004083 ORTHO05D005029 1.7e-20 103.2 154 36.4
Ciclev10019373m.g Citrus clementina HOM05D004083 ORTHO05D005029 2.2e-20 102.8 119 40.3
THA.LOC104812102 Tarenaya hassleriana HOM05D004083 ORTHO05D005029 2.2e-20 102.8 149 37.6
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 2.9e-20 102.4 154 36.4
RcHm_v2.0_Chr7g0183041 Rosa chinensis HOM05D004083 ORTHO05D005029 2.9e-20 102.4 121 40.5
vmacro17608 Vaccinium macrocarpon HOM05D004083 ORTHO05D005029 2.9e-20 102.4 148 37.8
VMungo1215G1356 Vigna mungo HOM05D004083 ORTHO05D005029 3.8e-20 102.1 118 41.5
MSTRG.9600 Avicennia marina HOM05D004083 ORTHO05D005029 5.0e-20 101.7 120 43.3
BraA02t06969Z Brassica rapa HOM05D004083 ORTHO05D005029 5.0e-20 101.7 154 36.4
Atru.chr9.431 Acer truncatum HOM05D004083 ORTHO05D005029 6.5e-20 101.3 118 39.0
C02p31810 Brassica napus HOM05D004083 ORTHO05D005029 6.5e-20 101.3 154 36.4
Eucgr.B00587 Eucalyptus grandis HOM05D004083 ORTHO05D005029 6.5e-20 101.3 120 40.0
Thhalv10018249m.g Eutrema salsugineum HOM05D004083 ORTHO05D005029 6.5e-20 101.3 126 38.1
BcaC03g15492 Brassica carinata HOM05D004083 ORTHO05D005029 8.5e-20 100.9 154 36.4
BcaC03g15497 Brassica carinata HOM05D004083 ORTHO05D005029 8.5e-20 100.9 154 36.4
A02p19220 Brassica napus HOM05D004083 ORTHO05D005029 8.5e-20 100.9 154 36.4
Sp5g29430 Schrenkiella parvula HOM05D004083 ORTHO05D005029 8.5e-20 100.9 154 36.4
RcHm_v2.0_Chr7g0200511 Rosa chinensis HOM05D004083 ORTHO05D005029 1.4e-19 100.1 62 66.1
Rhsim08G0146200 Rhododendron simsii HOM05D004083 ORTHO05D005029 1.9e-19 99.8 90 46.7
BolC2t09208H Brassica oleracea HOM05D004083 ORTHO05D005029 2.5e-19 99.4 154 35.7
Carub.0002s2104 Capsella rubella HOM05D004083 ORTHO05D005029 3.2e-19 99.0 126 37.3
AL2G34130 Arabidopsis lyrata HOM05D004083 ORTHO05D005029 4.2e-19 98.6 126 38.1
AT1G74250 Arabidopsis thaliana HOM05D004083 ORTHO05D005029 5.5e-19 98.2 122 37.7
Nn3g17443 Nelumbo nucifera HOM05D004083 ORTHO05D005029 5.5e-19 98.2 123 37.4
MBI19_g37728_MAGBIO Magnolia biondii HOM05D004083 ORTHO05D005029 7.2e-19 97.8 126 37.3
PGR083G0930 Punica granatum HOM05D004083 ORTHO05D005029 7.2e-19 97.8 119 38.7
Oeu014402.1 Olea europaea HOM05D004083 ORTHO05D005029 1.2e-18 97.1 90 50.0
Aqoxy3G03641 Aquilegia oxysepala HOM05D004083 ORTHO05D005029 1.6e-18 96.7 150 38.0
TAR264G0004 Trochodendron aralioides HOM05D004083 ORTHO05D005029 1.6e-18 96.7 90 44.4
SalBow2G0571 Salvia bowleyana HOM05D004083 ORTHO05D005029 4.7e-18 95.1 92 46.7
CARHR067510 Cardamine hirsuta HOM05D004083 ORTHO05D005029 6.1e-18 94.7 126 35.7
Lsat_1_v5_gn_4_111021 Lactuca sativa HOM05D004083 ORTHO05D005029 2.3e-17 92.8 90 47.8
Lsat_1_v5_gn_5_22480 Lactuca sativa HOM05D004083 ORTHO05D005029 2.3e-17 92.8 90 50.0
Oeu042728.1 Olea europaea HOM05D004083 ORTHO05D005029 2.3e-17 92.8 90 47.8
TWI15G0273 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 2.3e-17 92.8 117 40.2
Aa31LG4G4540 Aethionema arabicum HOM05D004083 ORTHO05D005029 3.0e-17 92.4 90 43.3
Hma1.2p1_0060F.1_g033140 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 3.9e-17 92.0 123 39.0
CDE04G1128 Ceratophyllum demersum HOM05D004083 ORTHO05D005029 5.2e-17 91.7 121 42.1
Solyc03g115140.4 Solanum lycopersicum HOM05D004083 ORTHO05D005029 6.7e-17 91.3 92 44.6
PGSC0003DMG400024541 Solanum tuberosum HOM05D004083 ORTHO05D005029 6.7e-17 91.3 92 44.6
DCAR_023173 Daucus carota HOM05D004083 ORTHO05D005029 8.8e-17 90.9 119 38.7
Os12g0502700 Oryza sativa ssp. japonica HOM05D004083 ORTHO05D005029 8.8e-17 90.9 122 36.1
Hma1.2p1_0060F.1_g033150 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.1e-16 90.5 90 45.6
PSO478G3647 Papaver somniferum HOM05D004083 ORTHO05D005029 4.4e-16 88.6 133 36.1
Sopen03g034200 Solanum pennellii HOM05D004083 ORTHO05D005029 4.4e-16 88.6 92 42.4
Zm00001eb409280 Zea mays HOM05D004083 ORTHO05D005029 4.4e-16 88.6 153 31.4
A07p29490 Brassica napus HOM05D004083 ORTHO05D005029 5.7e-16 88.2 90 43.3
HPP92_009477 Vanilla planifolia HOM05D004083 ORTHO05D005029 5.7e-16 88.2 150 34.0
Lj5C102T12 Lonicera japonica HOM05D004083 ORTHO05D005029 7.4e-16 87.8 90 45.6
Peaxi162Scf00201g00248 Petunia axillaris HOM05D004083 ORTHO05D005029 1.3e-15 87.0 138 34.8
BraA07t30587Z Brassica rapa HOM05D004083 ORTHO05D005029 1.7e-15 86.7 118 38.1
HanXRQChr16g0502431 Helianthus annuus HOM05D004083 ORTHO05D005029 1.7e-15 86.7 147 36.1
PSO017G0790 Papaver somniferum HOM05D004083 ORTHO05D005029 2.8e-15 85.9 133 35.3
Zm00001eb409350 Zea mays HOM05D004083 ORTHO05D005029 3.7e-15 85.5 153 32.0
Zm00001eb409390 Zea mays HOM05D004083 ORTHO05D005029 3.7e-15 85.5 153 32.0
C06p33480 Brassica napus HOM05D004083 ORTHO05D005029 4.8e-15 85.1 90 42.2
BolC6t38462H Brassica oleracea HOM05D004083 ORTHO05D005029 4.8e-15 85.1 90 42.2
Zm00001eb409300 Zea mays HOM05D004083 ORTHO05D005029 4.8e-15 85.1 153 32.0
Solyc03g115120.1 Solanum lycopersicum HOM05D004083 ORTHO05D005029 2.4e-14 82.8 87 42.5
SGA_v2.0_scaffold42G16038 Striga asiatica HOM05D004083 ORTHO05D005029 2.4e-14 82.8 172 34.3
Sopen03g034190 Solanum pennellii HOM05D004083 ORTHO05D005029 7.0e-14 81.3 121 34.7
Pp3c5_3270 Physcomitrium patens HOM05D004083 ORTHO05D005029 1.6e-13 80.1 136 30.1
SalBow7G3022 Salvia bowleyana HOM05D004083 ORTHO05D005029 1.6e-13 80.1 128 35.2
Hund02589 Selenicereus undatus HOM05D004083 ORTHO05D005029 3.5e-13 79.0 116 34.5
EL10Ac5g11124 Beta vulgaris HOM05D004083 ORTHO05D005029 2.2e-12 76.3 119 34.5
TWI12G1289 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 2.9e-12 75.9 79 45.6
TWI56G1375 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 3.8e-12 75.5 132 34.8
CAN.G1228.28 Capsicum annuum HOM05D004083 ORTHO05D000105 5.0e-12 75.1 74 43.2
Sc04g0004330 Simmondsia chinensis HOM05D004083 ORTHO05D005029 1.1e-11 73.9 149 30.9
TWI56G0106 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 1.1e-11 73.9 110 36.4
ATR0064G112 Amborella trichopoda HOM05D004083 ORTHO05D005029 1.5e-11 73.6 94 34.0
SEGI_38744 Sequoiadendron giganteum HOM05D004083 ORTHO05D005029 2.5e-11 72.8 93 37.6
AUR62008522 Chenopodium quinoa HOM05D004083 ORTHO05D005029 3.2e-11 72.4 90 37.8
AUR62021567 Chenopodium quinoa HOM05D004083 ORTHO05D005029 7.2e-11 71.2 90 36.7
Ah.11g047840 Amaranthus hybridus HOM05D004083 ORTHO05D005029 1.2e-10 70.5 119 31.9
SMO203G0173 Selaginella moellendorffii HOM05D004083 ORTHO05D005029 1.2e-10 70.5 129 30.2
ECA232G3573 Erigeron canadensis HOM05D004083 ORTHO05D005029 2.1e-10 69.7 90 34.4
Migut.D01668 Erythranthe guttata HOM05D004083 ORTHO05D005029 4.7e-10 68.6 122 32.0
CBR_g40972 Chara braunii HOM05D004083 ORTHO05D005029 6.1e-10 68.2 94 33.0
BcaC08g46857 Brassica carinata HOM05D004083 ORTHO05D005029 3.0e-09 65.9 122 30.3
AagrBONN_evm.TU.Sc2ySwM_228.3286 Anthoceros agrestis HOM05D004083 ORTHO05D005029 2.0e-08 63.2 104 33.7
Actinidia00358 Actinidia chinensis HOM05D004083 ORTHO05D005029 3.3e-08 62.4 68 41.2
BcaC08g45598 Brassica carinata HOM05D004083 ORTHO05D005029 6.3e-07 58.2 60 41.7


User provided reference genes

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