Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0129171 Rosa chinensis HOM05D000002 ORTHO05D036398 2.3e-47 191.8 93 100.0
RcHm_v2.0_Chr6g0283831 Rosa chinensis HOM05D000002 ORTHO05D036398 2.5e-25 118.6 57 100.0
PSO063G3920 Papaver somniferum HOM05D000002 ORTHO05D000001 1.1e-12 76.6 60 63.3
RcHm_v2.0_Chr5g0074721 Rosa chinensis HOM05D000002 ORTHO05D000001 3.5e-11 71.6 57 59.6
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 6.0e-11 70.9 60 61.7
MD02G1303700 Malus domestica HOM05D000002 ORTHO05D000001 6.0e-11 70.9 57 59.6
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 6.0e-11 70.9 93 49.5
RcHm_v2.0_Chr7g0210861 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-10 70.1 57 57.9
QL10p064699 Quercus lobata HOM05D000006 ORTHO05D000001 3.0e-10 68.6 78 47.4
QL03p020061 Quercus lobata HOM05D000002 ORTHO05D000001 3.9e-10 68.2 76 47.4
CSS0031761 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.6e-10 67.4 57 57.9
CSS0003497 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.7e-10 67.0 67 52.2
MD05G1050400 Malus domestica HOM05D000002 ORTHO05D000001 8.7e-10 67.0 57 54.4
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 2.5e-09 65.5 63 49.2
CSS0027108 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-09 65.1 73 43.8
PSO339G0129 Papaver somniferum HOM05D000002 ORTHO05D000001 3.3e-09 65.1 65 47.7
CSS0025599 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.3e-09 64.7 57 57.9
CSS0048353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.3e-09 64.7 57 57.9
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 4.3e-09 64.7 91 44.0
FvH4_3g33302 Fragaria vesca HOM05D000002 ORTHO05D000001 5.6e-09 64.3 65 50.8
CSS0023757 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-09 63.9 57 52.6
CSS0015054 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.6e-09 63.5 74 40.5
CSS0040785 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.6e-09 63.5 74 40.5
MD14G1109000 Malus domestica HOM05D000002 ORTHO05D000001 9.6e-09 63.5 59 50.8
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 9.6e-09 63.5 57 61.4
CSS0000236 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-08 63.2 57 54.4
CSS0005961 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-08 63.2 74 39.2
CSS0022424 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-08 63.2 56 57.1
CSS0022515 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-08 63.2 73 42.5
CSS0046407 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-08 63.2 57 54.4
CSS0012889 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-08 62.8 72 45.8
CSS0020732 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-08 62.8 60 51.7
CSS0025657 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-08 62.8 58 50.0
CSS0025570 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-08 62.4 57 54.4
ECA238G2413 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-08 62.4 64 48.4
CSS0020295 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-08 62.0 57 56.1
CSS0026931 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-08 62.0 57 49.1
CSS0029542 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-08 62.0 63 47.6
CSS0048974 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-08 62.0 57 56.1
ECA232G3680 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-08 62.0 64 46.9
CSS0017009 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-08 61.6 57 52.6
CSS0033930 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-08 61.6 57 52.6
CSS0037544 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-08 61.6 57 49.1
CSS0043651 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-08 61.6 57 52.6
CSS0043941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-08 61.6 57 52.6
CSS0011104 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 4.8e-08 61.2 91 39.6
CSS0041077 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-08 61.2 59 47.5
CSS0041345 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-08 61.2 68 44.1
TAR285G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.8e-08 61.2 57 52.6
CSS0030111 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.2e-08 60.8 57 49.1
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.2e-08 60.8 59 50.8
CSS0001580 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-08 60.5 92 39.1
CSS0025912 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-08 60.5 83 42.2
CSS0037138 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-08 60.5 57 49.1
CANSAT64G0622 Cannabis sativa HOM05D000002 ORTHO05D017719 8.1e-08 60.5 60 48.3
CSS0042540 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-07 60.1 57 52.6
CSS0042940 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-07 59.7 72 43.1
ECA248G0638 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-07 59.7 52 57.7
CSS0000340 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D109689 1.8e-07 59.3 57 49.1
CSS0008547 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-07 59.3 69 46.4
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-07 59.3 69 46.4
CSS0026033 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-07 59.3 73 41.1
CSS0032762 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-07 59.3 56 48.2
CSS0037553 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-07 59.3 51 52.9
ECA234G2598 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-07 59.3 59 49.2
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 1.8e-07 59.3 60 51.7
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-07 58.9 58 51.7
Sopen01g017610 Solanum pennellii HOM05D000002 ORTHO05D009932 2.4e-07 58.9 88 38.6
CSS0002530 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-07 58.5 57 47.4
CSS0009953 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-07 58.5 57 54.4
CSS0015349 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-07 58.5 83 43.4
CSS0030373 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-07 58.5 61 47.5
CSS0035430 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-07 58.5 83 41.0
CSS0049085 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-07 58.5 57 47.4
TPR.G18516 Trifolium pratense HOM05D000002 ORTHO05D000001 3.1e-07 58.5 60 48.3
CSS0016741 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-07 58.2 71 42.3
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-07 58.2 59 49.2
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 4.0e-07 58.2 55 50.9
RcHm_v2.0_Chr7g0238261 Rosa chinensis HOM05D000002 ORTHO05D000001 4.0e-07 58.2 68 42.6
Atru.chr5.2666 Acer truncatum HOM05D000934 ORTHO05D000746 5.3e-07 57.8 60 45.0
ECA246G3662 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.3e-07 57.8 60 45.0
ECA247G0128 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.3e-07 57.8 59 47.5
MD12G1052500 Malus domestica HOM05D000002 ORTHO05D000001 5.3e-07 57.8 63 46.0
RcHm_v2.0_Chr1g0322161 Rosa chinensis HOM05D000002 ORTHO05D000001 5.3e-07 57.8 72 43.1
CSS0005077 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 6.9e-07 57.4 60 48.3
CSS0006236 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.9e-07 57.4 60 45.0
CSS0020028 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.9e-07 57.4 61 47.5
CSS0024028 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.9e-07 57.4 60 45.0
ECA232G2250 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.9e-07 57.4 60 43.3
HanXRQChr08g0213551 Helianthus annuus HOM05D000002 ORTHO05D000001 6.9e-07 57.4 52 53.8
CSS0016848 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.0e-07 57.0 60 45.0
CSS0032072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.0e-07 57.0 57 49.1
CSS0049186 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.0e-07 57.0 65 47.7
HanXRQChr17g0570071 Helianthus annuus HOM05D000002 ORTHO05D000001 9.0e-07 57.0 59 45.8
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 9.0e-07 57.0 74 43.2
TPR.G8915 Trifolium pratense HOM05D000002 ORTHO05D000001 9.0e-07 57.0 63 47.6
CSS0023367 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-06 56.6 61 47.5
MD17G1248200 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-06 56.6 71 45.1
PSO339G0081 Papaver somniferum HOM05D000002 ORTHO05D000001 1.2e-06 56.6 59 47.5
PSO832G3250 Papaver somniferum HOM05D000002 ORTHO05D000001 1.2e-06 56.6 70 44.3
Sopen09g025260 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-06 56.6 62 50.0
Atru.chr4.257 Acer truncatum HOM05D000002 ORTHO05D000001 1.5e-06 56.2 93 38.7
CSS0020834 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-06 56.2 72 41.7
CSS0048215 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-06 56.2 59 49.2
ECA238G4695 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-06 56.2 52 51.9
ECA248G2283 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-06 56.2 52 51.9
PSO017G2603 Papaver somniferum HOM05D000002 ORTHO05D000001 1.5e-06 56.2 59 47.5
CSS0031179 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-06 55.8 57 49.1
CSS0035668 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-06 55.8 58 48.3
CSS0038714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-06 55.8 85 35.3
ECA238G0299 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.0e-06 55.8 52 53.8
TPR.G34268 Trifolium pratense HOM05D000002 ORTHO05D000001 2.0e-06 55.8 57 50.9
CSS0040905 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-06 55.5 57 49.1
RcHm_v2.0_Chr1g0320771 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-06 55.5 65 44.6
CSS0011958 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-06 55.1 60 43.3
CSS0018300 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-06 55.1 55 47.3
CSS0037493 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-06 55.1 55 47.3
CSS0042463 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-06 55.1 55 47.3
CSS0043893 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-06 55.1 63 44.4
CSS0050312 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-06 55.1 55 47.3
CANSAT64G1112 Cannabis sativa HOM05D000002 ORTHO05D000001 3.4e-06 55.1 59 44.1
Sopen06g023490 Solanum pennellii HOM05D000002 ORTHO05D037744 3.4e-06 55.1 58 50.0
CSS0029163 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.4e-06 54.7 57 49.1
CSS0038345 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.4e-06 54.7 60 46.7
HanXRQChr17g0568341 Helianthus annuus HOM05D000002 ORTHO05D000001 4.4e-06 54.7 57 49.1
RcHm_v2.0_Chr1g0348001 Rosa chinensis HOM05D000002 ORTHO05D000001 4.4e-06 54.7 70 44.3
Sopen01g012150 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-06 54.7 58 44.8
Sopen08g012970 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-06 54.7 48 54.2
Sopen11g014180 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-06 54.7 58 44.8
TPR.G7911 Trifolium pratense HOM05D000002 ORTHO05D000001 4.4e-06 54.7 59 49.2
CSS0005461 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.8e-06 54.3 59 47.5
CSS0010101 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D009932 5.8e-06 54.3 60 46.7
Sopen01g010690 Solanum pennellii HOM05D000002 ORTHO05D000001 5.8e-06 54.3 58 44.8
CSS0002083 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.6e-06 53.9 60 45.0
CSS0049045 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.6e-06 53.9 60 45.0
HanXRQChr07g0187191 Helianthus annuus HOM05D000002 ORTHO05D000001 7.6e-06 53.9 58 46.6
PSO591G0014 Papaver somniferum HOM05D000002 ORTHO05D000001 7.6e-06 53.9 46 58.7
RcHm_v2.0_Chr2g0139021 Rosa chinensis HOM05D000002 ORTHO05D000001 7.6e-06 53.9 58 46.6
TPR.G17816 Trifolium pratense HOM05D000002 ORTHO05D000001 7.6e-06 53.9 61 49.2
TPR.G35790 Trifolium pratense HOM05D000002 ORTHO05D000001 7.6e-06 53.9 59 47.5
TPR.G8001 Trifolium pratense HOM05D000002 ORTHO05D000001 7.6e-06 53.9 76 42.1
Aa31LG2G17610 Aethionema arabicum HOM05D000002 ORTHO05D000001 9.9e-06 53.5 60 53.3
Ah.05g176120 Amaranthus hybridus HOM05D000002 ORTHO05D000001 9.9e-06 53.5 78 43.6
CSS0029344 Camellia sinensis var. sinensis HOM05D009168 ORTHO05D011323 9.9e-06 53.5 57 40.4
CSS0031742 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.9e-06 53.5 57 47.4
CSS0047697 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.9e-06 53.5 61 45.9
ECA247G2337 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.9e-06 53.5 52 50.0
ECA248G2246 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.9e-06 53.5 73 42.5
FvH4_3g10464 Fragaria vesca HOM05D000002 ORTHO05D000001 9.9e-06 53.5 72 43.1
Hma1.2p1_3744F.1_g337460 Hydrangea macrophylla HOM05D000002 ORTHO05D036398 9.9e-06 53.5 59 47.5
PSO210G2810 Papaver somniferum HOM05D000002 ORTHO05D000001 9.9e-06 53.5 46 52.2
THA.LOC104804587 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.9e-06 53.5 88 39.8


User provided reference genes

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