Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 6.0e-225 783.9 401 100.0
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 1.1e-210 736.5 378 100.0
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.7e-171 606.3 338 90.2
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 1.4e-170 603.2 338 89.9
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.2e-170 601.7 338 89.6
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 5.5e-170 601.3 338 89.6
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 9.4e-170 600.5 338 89.9
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 2.4e-157 559.3 337 81.9
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 7.0e-157 557.8 337 81.9
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 1.1e-154 550.4 339 81.1
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 2.2e-134 483.0 343 70.0
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 5.6e-130 468.4 339 68.1
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 4.0e-128 462.2 340 67.9
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 2.0e-127 459.9 385 63.1
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 5.8e-127 458.4 338 66.6
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 6.4e-126 454.9 337 66.5
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.9e-125 453.4 338 66.6
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 7.0e-125 451.4 338 67.2
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 9.2e-125 451.1 338 66.9
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 2.7e-124 449.5 338 66.9
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 7.8e-124 448.0 334 67.1
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 2.3e-123 446.4 337 66.5
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 1.9e-122 443.4 337 66.2
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 6.2e-121 438.3 337 66.2
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.4e-120 437.2 334 65.3
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 4.0e-120 435.6 334 64.7
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 4.0e-120 435.6 342 63.2
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 5.2e-120 435.3 343 62.4
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.5e-119 433.7 334 64.4
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 2.0e-119 433.3 337 64.7
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 4.4e-119 432.2 340 63.5
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.1e-117 427.6 344 62.8
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 2.1e-116 423.3 344 61.6
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 3.9e-115 419.1 349 59.6
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 4.3e-114 415.6 337 63.5
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 5.6e-114 415.2 335 61.5
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 2.3e-112 409.8 344 60.2
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 4.0e-112 409.1 338 61.2
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 5.2e-112 408.7 349 58.2
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 6.8e-112 408.3 342 61.7
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 6.8e-112 408.3 338 60.9
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 1.2e-111 407.5 338 58.3
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.5e-111 407.1 335 60.0
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 2.6e-111 406.4 339 62.5
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 3.4e-111 406.0 338 62.4
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 1.3e-110 404.1 335 61.8
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 2.2e-110 403.3 330 61.8
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 2.2e-110 403.3 348 60.3
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 3.8e-110 402.5 330 58.8
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 4.9e-110 402.1 331 58.9
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 8.4e-110 401.4 330 58.8
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 1.1e-109 401.0 336 59.8
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 1.1e-109 401.0 330 60.6
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 9.2e-109 397.9 344 61.3
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 9.2e-109 397.9 336 60.7
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 1.6e-108 397.1 327 57.2
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 1.6e-108 397.1 343 58.9
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 1.6e-108 397.1 339 58.4
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 2.7e-108 396.4 335 59.1
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 2.7e-108 396.4 342 58.8
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 6.0e-108 395.2 330 57.6
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 6.0e-108 395.2 338 60.4
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.3e-107 394.0 331 59.8
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 1.3e-107 394.0 329 59.3
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 2.3e-107 393.3 330 57.6
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 6.6e-107 391.7 335 59.4
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 8.6e-107 391.3 340 59.1
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.5e-106 389.8 349 58.5
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 3.3e-106 389.4 333 58.6
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 4.3e-106 389.0 332 59.6
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 2.1e-105 386.7 335 57.9
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 4.7e-105 385.6 339 58.4
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.2e-105 385.2 333 58.3
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.1e-104 384.4 331 58.0
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.4e-104 384.0 335 57.9
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 2.4e-104 383.3 343 56.3
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 2.6e-103 379.8 345 55.7
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 2.6e-103 379.8 334 59.9
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 2.6e-103 379.8 340 57.1
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 7.6e-103 378.3 339 58.1
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 2.2e-102 376.7 339 57.8
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 6.4e-102 375.2 340 57.1
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 1.4e-101 374.0 340 56.8
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 1.9e-101 373.6 345 55.7
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 4.6e-100 369.0 332 58.1
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 6.0e-100 368.6 334 57.2
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 1.7e-99 367.1 340 55.9
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 1.7e-99 367.1 340 55.9
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 1.7e-99 367.1 340 55.9
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 3.0e-99 366.3 336 56.2
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 3.0e-99 366.3 336 56.2
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 6.6e-99 365.2 338 54.7
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 8.7e-99 364.8 340 57.4
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 8.7e-99 364.8 346 54.0
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 1.1e-98 364.4 358 54.5
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 1.5e-98 364.0 339 56.6
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 1.9e-98 363.6 340 56.5
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 3.3e-98 362.8 340 56.2
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 4.3e-98 362.5 339 56.9
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 4.3e-98 362.5 334 56.0
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 1.6e-97 360.5 328 55.2
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 4.8e-97 359.0 337 56.4
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 4.0e-96 355.9 338 55.3
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 6.9e-96 355.1 358 53.1
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 9.0e-96 354.8 322 55.3
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 1.2e-95 354.4 334 53.9
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 1.5e-95 354.0 337 55.5
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 3.4e-95 352.8 344 52.9
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.4e-95 352.8 349 52.7
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 4.5e-95 352.4 355 53.5
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 2.9e-94 349.7 344 55.2
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 4.9e-94 349.0 330 56.4
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 1.9e-93 347.1 338 53.6
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.4e-93 346.7 335 53.4
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.4e-93 346.7 338 54.1
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 3.2e-93 346.3 340 54.4
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 2.1e-92 343.6 335 52.8
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 2.1e-92 343.6 335 53.7
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 4.6e-92 342.4 330 55.2
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.0e-91 341.3 342 54.1
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 4.5e-87 325.9 313 54.0
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 2.2e-86 323.6 352 48.0
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 4.9e-86 322.4 338 53.6
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 7.1e-85 318.5 332 50.9
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 1.3e-83 314.3 343 49.9
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 4.0e-80 302.8 410 43.9
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 3.2e-77 293.1 341 45.7
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 1.2e-76 291.2 334 48.2
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 3.5e-76 289.7 341 47.2
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 1.0e-75 288.1 358 46.4
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 4.8e-73 279.3 358 45.5
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 7.6e-71 271.9 341 48.1
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 1.3e-70 271.2 340 45.9
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 4.6e-68 262.7 367 41.4
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 1.0e-67 261.5 348 43.7
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.9e-66 257.3 196 62.2
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 6.9e-64 248.8 188 62.8
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 3.8e-62 243.0 292 47.9
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 9.1e-56 221.9 201 54.7
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 2.7e-52 210.3 212 58.5
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 2.6e-42 177.2 339 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 9.1e-40 168.7 347 33.4
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 6.1e-36 156.0 147 55.8
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 3.0e-35 153.7 113 76.1
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 1.1e-32 145.2 97 80.4
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 2.6e-26 124.0 207 37.7
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.2e-15 88.6 110 52.7
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.5e-15 87.0 70 62.9
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 5.9e-15 86.3 250 29.2
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 2.3e-14 84.3 99 48.5
AagrBONN_evm.TU.Sc2ySwM_228.4816 Anthoceros agrestis HOM05D003819 ORTHO05D038376 2.1e-12 77.8 222 31.5
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 5.2e-11 73.2 62 51.6
Nn1g05874 Nelumbo nucifera HOM05D003819 ORTHO05D005291 9.2e-08 62.4 49 61.2


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