Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 2.3e-143 512.3 270 100.0
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 1.4e-100 370.2 235 82.1
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.0e-100 368.6 235 82.1
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.0e-100 368.6 235 82.1
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 9.0e-100 367.5 235 82.1
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 2.6e-75 286.2 239 66.1
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.9e-73 280.0 239 65.3
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.7e-72 276.2 236 64.4
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.4e-71 273.9 242 62.8
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.7e-69 266.9 245 62.4
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.4e-68 263.8 238 62.2
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 5.3e-68 261.9 246 58.1
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 7.0e-68 261.5 241 60.2
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.5e-67 260.4 264 58.0
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.6e-67 259.6 241 61.0
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.0e-66 257.7 247 59.1
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.8e-66 255.8 245 58.8
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 5.0e-66 255.4 264 56.8
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 4.2e-65 252.3 268 53.7
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 5.5e-65 251.9 235 58.7
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 2.7e-64 249.6 235 58.3
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 3.6e-64 249.2 267 53.2
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 4.7e-64 248.8 235 58.3
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 6.1e-64 248.4 244 57.8
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 6.1e-64 248.4 239 56.9
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 8.0e-64 248.1 240 58.8
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.8e-63 246.9 248 56.0
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 5.2e-63 245.4 246 56.9
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 3.3e-62 242.7 246 56.1
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 4.4e-62 242.3 231 58.4
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 4.4e-62 242.3 217 58.5
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 9.7e-62 241.1 238 58.8
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-61 240.7 248 54.4
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-61 240.4 210 58.1
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.8e-61 239.6 235 56.6
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 6.3e-61 238.4 222 55.9
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.1e-60 237.7 246 54.9
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.1e-60 237.7 210 59.5
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.4e-60 237.3 244 58.6
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-60 236.5 244 54.1
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.1e-60 236.1 244 54.1
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 7.0e-60 235.0 260 53.8
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 7.0e-60 235.0 234 58.5
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 7.0e-60 235.0 248 56.0
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 7.0e-60 235.0 237 53.6
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 9.1e-60 234.6 248 56.0
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.2e-59 234.2 262 53.1
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 2.6e-59 233.0 234 57.7
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.6e-59 233.0 248 53.2
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.5e-59 232.6 200 59.0
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 4.5e-59 232.3 272 51.1
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 5.9e-59 231.9 275 50.9
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 7.7e-59 231.5 227 56.4
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.0e-58 231.1 252 50.8
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 1.3e-58 230.7 230 52.6
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.3e-58 230.7 213 58.2
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 5.0e-58 228.8 213 57.7
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.1e-57 227.6 247 52.6
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.1e-57 227.6 243 53.5
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 2.5e-57 226.5 247 56.3
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 3.2e-57 226.1 230 51.3
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 3.2e-57 226.1 251 52.6
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 5.5e-57 225.3 259 51.0
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 7.2e-57 224.9 253 52.2
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 1.2e-56 224.2 250 54.8
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 1.6e-56 223.8 159 69.2
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.7e-56 223.0 240 52.9
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 2.7e-56 223.0 255 50.6
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 4.7e-56 222.2 256 53.5
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 1.0e-55 221.1 249 53.0
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 2.3e-55 219.9 235 51.9
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.2e-55 218.8 233 53.6
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.8e-55 218.0 248 51.6
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.2e-54 217.6 253 48.6
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 2.6e-54 216.5 253 51.0
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 9.8e-54 214.5 253 49.4
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.3e-53 214.2 236 52.5
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 1.7e-53 213.8 242 51.7
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.2e-53 213.4 248 50.4
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 2.2e-53 213.4 234 50.4
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 2.8e-53 213.0 250 50.8
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 1.4e-52 210.7 247 47.0
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.4e-52 210.7 247 49.0
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 2.4e-52 209.9 246 48.8
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.1e-52 209.5 239 51.0
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 1.6e-51 207.2 239 51.5
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 2.7e-51 206.5 220 54.1
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 3.5e-51 206.1 237 49.4
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 5.9e-51 205.3 242 51.2
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 7.7e-51 204.9 244 46.3
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 1.3e-50 204.1 219 55.3
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 1.3e-50 204.1 261 44.8
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 1.3e-50 204.1 237 48.9
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.7e-50 203.8 246 48.4
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 3.8e-50 202.6 254 48.4
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 7.2e-49 198.4 225 44.9
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 9.4e-49 198.0 219 54.8
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 3.6e-48 196.1 256 46.1
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 7.5e-46 188.3 282 44.0
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 9.8e-46 188.0 161 57.8
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 1.8e-44 183.7 161 54.7
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 1.0e-42 177.9 235 44.3
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 1.9e-41 173.7 250 41.6
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 5.4e-28 129.0 98 64.3
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-26 124.0 278 37.8
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.8e-24 116.7 217 40.6
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 3.1e-23 113.2 178 46.6
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 5.2e-23 112.5 153 47.7
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 2.0e-22 110.5 153 48.4
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 3.4e-22 109.8 85 64.7
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 5.8e-22 109.0 153 46.4
Gorai.011G161100 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.8e-22 108.2 77 61.0
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 1.3e-21 107.8 71 69.0
Gohir.D10G144200 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.9e-21 106.7 77 61.0
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.4e-21 105.5 112 56.2
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 1.9e-20 104.0 229 32.8
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 2.4e-20 103.6 174 43.7
Nn3g17957 Nelumbo nucifera HOM05D003094 ORTHO05D003482 2.1e-19 100.5 77 62.3
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.7e-19 100.1 100 56.0
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.5e-19 99.8 118 53.4
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.7e-18 97.4 72 69.4
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 6.6e-18 95.5 72 68.1
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-17 94.0 73 65.8
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.3e-17 92.8 72 65.3
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 7.3e-17 92.0 151 42.4
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 1.6e-16 90.9 104 46.2
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.2e-16 89.0 73 64.4
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-15 88.2 73 61.6
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.2e-15 85.9 167 39.5
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 3.4e-14 83.2 172 38.4
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 9.9e-14 81.6 187 36.9
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.7e-13 80.9 174 36.8
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 1.7e-13 80.9 172 37.2
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.2e-13 80.5 171 37.4
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 8.4e-13 78.6 184 37.5
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.1e-12 78.2 190 37.4
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 3.2e-12 76.6 184 35.3
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 9.2e-12 75.1 154 39.0
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.5e-11 73.2 78 51.3
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 6.0e-11 72.4 143 40.6
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.8e-11 72.0 78 50.0
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.8e-11 72.0 78 50.0
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 7.8e-11 72.0 163 40.5
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 7.8e-11 72.0 175 33.7
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-10 70.9 142 42.3
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.0e-10 70.1 96 42.7
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.9e-10 69.7 172 34.9
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 6.6e-10 68.9 147 40.1
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 8.6e-10 68.6 78 46.2
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 8.6e-10 68.6 141 41.1
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 1.5e-09 67.8 96 41.7
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 7.3e-09 65.5 141 41.1
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 9.6e-09 65.1 137 34.3
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 9.6e-09 65.1 113 38.9
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 9.6e-09 65.1 168 36.3
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 1.6e-08 64.3 133 39.1
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 2.8e-08 63.5 193 35.2
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 2.8e-08 63.5 42 71.4
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 3.6e-08 63.2 158 39.9
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 4.7e-08 62.8 98 41.8
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 6.2e-08 62.4 157 35.7
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 6.2e-08 62.4 173 37.6
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 8.1e-08 62.0 92 44.6
Nitab4.5_0008639g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002324 8.1e-08 62.0 88 46.6
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 1.1e-07 61.6 124 39.5
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 1.4e-07 61.2 168 37.5
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.8e-07 60.8 105 36.2
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.8e-07 60.8 141 39.7
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 2.4e-07 60.5 167 35.3
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 4.0e-07 59.7 159 36.5
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 5.2e-07 59.3 62 40.3
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 5.2e-07 59.3 144 33.3
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 5.2e-07 59.3 98 37.8
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 6.8e-07 58.9 110 40.9
Glyma.07G097400 Glycine max HOM05D003094 ORTHO05D003482 8.9e-07 58.5 151 37.1
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.2e-06 58.2 66 43.9
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 1.5e-06 57.8 157 33.8
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 2.0e-06 57.4 75 34.7
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 2.0e-06 57.4 117 36.8
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 2.0e-06 57.4 124 39.5
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 4.4e-06 56.2 83 38.6
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 4.4e-06 56.2 83 38.6
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.4e-06 56.2 137 38.7
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 5.8e-06 55.8 145 40.7


User provided reference genes

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