Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 2.8e-76 288.5 144 100.0
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 2.2e-73 278.9 144 96.5
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.2e-73 278.9 144 96.5
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.1e-72 276.6 144 96.5
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.6e-71 271.6 139 97.1
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 5.7e-69 264.2 143 93.0
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 5.4e-67 257.7 143 90.2
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 2.3e-65 252.3 143 87.4
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.6e-63 246.1 144 86.1
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.6e-63 245.0 143 85.3
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 4.7e-63 244.6 144 83.3
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.0e-63 243.8 140 85.0
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.0e-63 243.8 144 84.0
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.0e-63 243.8 144 84.0
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.0e-63 243.8 140 85.0
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.0e-62 243.4 135 88.1
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.4e-62 243.0 143 84.6
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.8e-62 242.7 143 84.6
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.8e-62 242.7 143 84.6
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.8e-62 242.7 143 85.3
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 3.0e-62 241.9 144 82.6
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.0e-62 241.9 144 83.3
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 4.0e-62 241.5 143 85.3
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 5.2e-62 241.1 143 85.3
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 5.2e-62 241.1 143 82.5
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 6.8e-62 240.7 143 84.6
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 6.8e-62 240.7 143 84.6
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 8.9e-62 240.4 135 88.1
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.5e-61 239.6 135 88.1
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.5e-61 239.6 140 83.6
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.0e-61 239.2 143 84.6
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 2.0e-61 239.2 143 82.5
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 3.4e-61 238.4 143 81.8
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.4e-61 238.4 135 88.1
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 7.5e-61 237.3 143 83.9
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 7.5e-61 237.3 143 81.1
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 9.8e-61 236.9 140 81.4
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 9.8e-61 236.9 143 81.8
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 9.8e-61 236.9 139 82.7
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 1.3e-60 236.5 144 84.0
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.2e-60 235.7 143 81.1
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 4.9e-60 234.6 133 86.5
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 4.9e-60 234.6 143 79.0
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 8.3e-60 233.8 142 80.3
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 8.3e-60 233.8 132 86.4
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 8.3e-60 233.8 143 79.0
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 8.3e-60 233.8 143 79.0
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.4e-59 233.0 138 84.8
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.4e-59 233.0 142 79.6
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.4e-59 233.0 136 83.8
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.8e-59 232.6 143 79.7
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 4.1e-59 231.5 133 85.7
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 4.1e-59 231.5 143 81.8
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 5.4e-59 231.1 138 84.1
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 7.0e-59 230.7 143 78.3
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 9.2e-59 230.3 141 79.4
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 1.6e-58 229.6 143 81.1
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 2.0e-58 229.2 128 88.3
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 5.9e-58 227.6 143 79.0
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 5.9e-58 227.6 134 80.6
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.0e-57 226.9 133 82.7
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.3e-57 226.5 133 85.0
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 1.7e-57 226.1 143 78.3
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 2.3e-57 225.7 139 82.0
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 5.0e-57 224.6 136 80.1
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 8.6e-57 223.8 141 78.0
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 1.1e-56 223.4 141 78.7
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.1e-56 223.4 143 79.0
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.5e-56 223.0 143 76.2
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 1.5e-56 223.0 141 78.0
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 1.9e-56 222.6 141 77.3
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.9e-56 222.6 142 76.8
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 2.5e-56 222.2 141 77.3
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 2.5e-56 222.2 141 77.3
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 4.3e-56 221.5 141 76.6
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 5.6e-56 221.1 131 81.7
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 7.3e-56 220.7 135 79.3
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 9.5e-56 220.3 139 77.0
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 1.2e-55 219.9 143 76.9
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 3.6e-55 218.4 133 80.5
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 3.6e-55 218.4 128 83.6
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 8.0e-55 217.2 131 80.2
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.0e-54 216.9 131 79.4
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.0e-54 216.9 132 80.3
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.4e-54 216.5 141 74.5
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.8e-54 216.1 133 78.9
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 2.3e-54 215.7 140 75.7
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 3.0e-54 215.3 131 79.4
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 3.0e-54 215.3 132 77.3
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.2e-54 214.5 133 78.9
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 8.9e-54 213.8 130 79.2
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 2.0e-53 212.6 130 80.0
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.7e-52 209.5 131 77.9
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-52 209.5 129 78.3
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 1.7e-52 209.5 137 74.5
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 3.7e-52 208.4 137 73.7
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 4.9e-52 208.0 128 80.5
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 8.3e-52 207.2 138 76.8
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.4e-51 206.5 138 76.8
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.8e-51 206.1 130 76.9
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.1e-51 204.9 127 80.3
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 7.0e-51 204.1 134 74.6
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 3.5e-50 201.8 128 77.3
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.6e-45 185.7 106 82.1
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 8.1e-39 164.1 130 63.1
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 2.3e-33 146.0 76 86.8
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 3.9e-33 145.2 76 88.2
Mapoly0002s0206 Marchantia polymorpha HOM05D003094 ORTHO05D003482 2.8e-31 139.0 104 66.3
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 1.4e-30 136.7 97 70.1
Oeu010081.1 Olea europaea HOM05D003094 ORTHO05D003482 1.2e-26 123.6 75 77.3
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 1.7e-25 119.8 98 61.2
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 4.3e-24 115.2 75 70.7
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 3.1e-22 109.0 92 56.5
Gohir.A06G136104 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.0e-22 108.6 77 68.8
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 3.8e-20 102.1 97 54.6
PRCOL_00003227 Prasinoderma coloniale HOM05D003094 ORTHO05D003482 1.3e-07 60.5 94 38.3
MCO03G327 Micromonas commoda HOM05D003094 ORTHO05D003482 2.8e-07 59.3 92 38.0


User provided reference genes

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