Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0127541 Rosa chinensis HOM05D008315 ORTHO05D009452 1.4e-143 513.1 280 100.0
RcHm_v2.0_Chr2g0143311 Rosa chinensis HOM05D012440 ORTHO05D009452 3.7e-141 505.0 275 99.6
RcHm_v2.0_Chr6g0260911 Rosa chinensis HOM05D012440 ORTHO05D009452 7.6e-110 401.0 275 72.4
RcHm_v2.0_Chr2g0111771 Rosa chinensis HOM05D012440 ORTHO05D009452 3.9e-106 388.7 275 70.5
FAN01G0827 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.6e-91 338.6 275 62.9
FAN04G2114 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.2e-76 288.9 272 58.1
RcHm_v2.0_Chr7g0201721 Rosa chinensis HOM05D008315 ORTHO05D009452 6.4e-40 168.7 193 43.5
RcHm_v2.0_Chr7g0184951 Rosa chinensis HOM05D008315 ORTHO05D009452 1.0e-37 161.4 190 42.6
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 4.3e-36 156.0 197 40.6
FAN25G1520 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.6e-35 152.9 188 41.5
FAN14G0707 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.4e-33 146.4 183 41.5
FAN08G2751 Fragaria x ananassa HOM05D008315 ORTHO05D009452 9.8e-33 144.8 196 40.3
FAN23G0323 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.2e-32 143.7 109 66.1
FAN03G0562 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.9e-32 143.3 173 41.0
FAN08G1914 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.7e-32 142.9 200 38.5
RcHm_v2.0_Chr2g0145131 Rosa chinensis HOM05D008315 ORTHO05D009452 4.9e-32 142.5 183 37.7
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.9e-31 140.6 196 37.2
RcHm_v2.0_Chr4g0435991 Rosa chinensis HOM05D009706 ORTHO05D009452 5.4e-31 139.0 184 39.1
RcHm_v2.0_Chr7g0237841 Rosa chinensis HOM05D009706 ORTHO05D009452 6.0e-30 135.6 182 37.9
RcHm_v2.0_Chr2g0151391 Rosa chinensis HOM05D008315 ORTHO05D009452 1.1e-28 131.3 180 33.3
FAN05G5299 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.1e-27 127.1 191 37.2
RcHm_v2.0_Chr2g0095801 Rosa chinensis HOM05D008315 ORTHO05D009452 2.8e-27 126.7 186 34.4
FAN10G3967 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.0e-25 120.6 189 38.6
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 2.0e-25 120.6 179 30.7
RcHm_v2.0_Chr3g0481961 Rosa chinensis HOM05D008315 ORTHO05D009452 3.7e-24 116.3 152 36.8
FAN24G1602 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.9e-23 114.0 200 32.5
RcHm_v2.0_Chr3g0468771 Rosa chinensis HOM05D009706 ORTHO05D009452 1.9e-23 114.0 136 39.7
FvH4_3g32800 Fragaria vesca HOM05D009706 ORTHO05D009452 4.1e-23 112.8 180 34.4
FAN05G1217 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.1e-23 112.8 193 32.6
FAN02G2771 Fragaria x ananassa HOM05D009706 ORTHO05D009452 4.6e-22 109.4 180 33.9
FAN27G0213 Fragaria x ananassa HOM05D009706 ORTHO05D009452 4.6e-22 109.4 180 33.9
RcHm_v2.0_Chr5g0039211 Rosa chinensis HOM05D008315 ORTHO05D009452 4.6e-22 109.4 120 44.2
FAN04G1611 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.8e-22 108.6 165 34.5
FAN05G2530 Fragaria x ananassa HOM05D009706 ORTHO05D009452 7.8e-22 108.6 166 33.7
FvH4_6g11351 Fragaria vesca HOM05D008315 ORTHO05D009452 5.1e-21 105.9 184 32.1
FvH4_2g21543 Fragaria vesca HOM05D008315 ORTHO05D009452 1.1e-20 104.8 148 36.5
FvH4_4g00092 Fragaria vesca HOM05D008315 ORTHO05D009452 1.9e-20 104.0 180 31.7
RcHm_v2.0_Chr6g0254441 Rosa chinensis HOM05D008315 ORTHO05D009452 2.8e-19 100.1 117 41.0
Hma1.2p1_0154F.1_g068115 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 6.8e-18 95.5 164 29.9
Hma1.2p1_0160F.1_g070785 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 6.8e-18 95.5 164 29.9
FvH4_2g00150 Fragaria vesca HOM05D008315 ORTHO05D009452 1.1e-15 88.2 193 28.0
FAN22G1488 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.9e-15 87.4 174 30.5
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.6e-13 79.0 181 29.8
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.6e-13 79.0 181 29.8
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 6.6e-13 79.0 181 29.8
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 8.7e-13 78.6 181 29.8
TAR633G0853 Trochodendron aralioides HOM05D001163 ORTHO05D001769 8.7e-13 78.6 181 29.8
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.9e-12 77.4 183 28.4
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 2.1e-11 73.9 192 26.0
FAN24G3308 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.6e-11 73.2 178 27.0
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.6e-11 73.2 158 24.7
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.2e-11 72.4 158 25.3
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.1e-10 71.6 157 25.5
Nn7g37626 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.8e-10 70.9 188 28.2
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 3.1e-10 70.1 189 25.4
Zm00001eb380870 Zea mays HOM05D008576 ORTHO05D000385 2.0e-09 67.4 181 29.3
PSO339G3546 Papaver somniferum HOM05D009891 ORTHO05D009626 3.4e-09 66.6 179 26.3
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 7.6e-09 65.5 179 26.8
FvH4_4g17840 Fragaria vesca HOM05D008315 ORTHO05D009452 7.6e-09 65.5 80 37.5
PSO541G0763 Papaver somniferum HOM05D001309 ORTHO05D000385 9.9e-09 65.1 147 27.9
Zm00001eb267220 Zea mays HOM05D008576 ORTHO05D000385 1.3e-08 64.7 181 28.7
FAN13G1770 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.2e-08 63.9 39 69.2
MBI06_g39196_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.9e-08 63.5 158 24.1
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.9e-08 63.5 159 26.4
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 3.8e-08 63.2 179 26.3
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 3.8e-08 63.2 53 49.1
Solyc09g014641.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.9e-08 62.8 165 26.1
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.9e-08 62.8 182 25.8
PSO339G1145 Papaver somniferum HOM05D009891 ORTHO05D009626 6.4e-08 62.4 155 30.3
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 8.4e-08 62.0 154 29.2
PGR083G0420 Punica granatum HOM05D001309 ORTHO05D000385 1.1e-07 61.6 159 25.2
ECA232G4413 Erigeron canadensis HOM05D000107 ORTHO05D000062 2.4e-07 60.5 164 24.4
PSO384G4636 Papaver somniferum HOM05D009891 ORTHO05D000385 2.4e-07 60.5 155 31.0
MD15G1288300 Malus domestica HOM05D027729 ORTHO05D009452 3.2e-07 60.1 182 25.8
AUR62014955 Chenopodium quinoa HOM05D008127 ORTHO05D000385 5.4e-07 59.3 197 24.4
SGA_v2.0_scaffold279G46788 Striga asiatica HOM05D004615 ORTHO05D000385 5.4e-07 59.3 170 24.7
FAN09G2984 Fragaria x ananassa HOM05D018384 ORTHO05D009452 7.1e-07 58.9 70 40.0
MBI17_g16204_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.1e-07 58.9 130 24.6
Dinv19999 Davidia involucrata HOM05D010146 ORTHO05D000385 9.3e-07 58.5 112 29.5
TWI79G1319 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 9.3e-07 58.5 179 27.4
HanXRQChr03g0084621 Helianthus annuus HOM05D008488 ORTHO05D000385 1.2e-06 58.2 187 27.3
Nitab4.5_0001261g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.2e-06 58.2 130 25.4
ECA096G0001 Erigeron canadensis HOM05D008488 ORTHO05D000385 1.6e-06 57.8 196 27.6
Dinv12592 Davidia involucrata HOM05D010146 ORTHO05D000385 2.1e-06 57.4 109 29.4
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 2.1e-06 57.4 109 29.4
FAN05G1126 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.1e-06 57.4 81 39.5
Dinv12401 Davidia involucrata HOM05D010146 ORTHO05D000385 3.5e-06 56.6 77 35.1
MBI14_g03116_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.5e-06 56.6 157 23.6
RcHm_v2.0_Chr6g0273901 Rosa chinensis HOM05D005012 ORTHO05D005886 3.5e-06 56.6 181 26.5
Dinv04329 Davidia involucrata HOM05D010146 ORTHO05D000385 4.6e-06 56.2 77 35.1
Dinv11732 Davidia involucrata HOM05D010146 ORTHO05D000385 4.6e-06 56.2 77 35.1
ECA234G1533 Erigeron canadensis HOM05D000107 ORTHO05D000062 6.0e-06 55.8 164 23.8
TAR628G0437 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.0e-06 55.8 181 26.5
Nitab4.5_0022706g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 7.9e-06 55.5 183 24.6
SGA_v2.0_scaffold623G53232 Striga asiatica HOM05D004615 ORTHO05D000385 7.9e-06 55.5 159 24.5


User provided reference genes

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