Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 1.3e-51 206.1 100 100.0
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 6.6e-40 167.2 87 90.8
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 6.6e-32 140.6 94 75.5
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 4.0e-29 131.3 87 74.7
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 3.4e-28 128.3 84 73.8
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 7.6e-28 127.1 87 72.4
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 9.9e-28 126.7 96 68.8
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 2.2e-27 125.6 89 68.5
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 6.4e-27 124.0 96 66.7
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 2.4e-26 122.1 89 68.5
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 2.1e-25 119.0 88 69.3
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 2.7e-25 118.6 96 63.5
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 3.9e-24 114.8 96 64.6
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 5.1e-24 114.4 84 67.9
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 3.3e-23 111.7 87 64.4
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 4.3e-23 111.3 83 67.5
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 1.3e-22 109.8 89 61.8
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 2.8e-22 108.6 87 65.5
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 3.6e-22 108.2 88 63.6
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 3.6e-22 108.2 85 63.5
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 2.4e-21 105.5 97 55.7
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 3.1e-21 105.1 84 65.5
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 9.0e-21 103.6 86 62.8
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 3.4e-20 101.7 85 58.8
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 4.5e-20 101.3 90 56.7
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 4.5e-20 101.3 83 61.4
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 7.6e-20 100.5 84 59.5
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 2.9e-19 98.6 100 53.0
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 3.8e-19 98.2 88 60.2
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 3.8e-19 98.2 98 54.1
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 3.8e-19 98.2 89 59.6
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 4.9e-19 97.8 83 59.0
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.1e-18 96.7 90 54.4
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 1.9e-18 95.9 80 58.8
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 4.2e-18 94.7 93 55.9
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 5.4e-18 94.4 83 57.8
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 5.4e-18 94.4 83 57.8
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 5.4e-18 94.4 97 51.5
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 1.6e-17 92.8 87 56.3
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.6e-17 92.8 89 50.6
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 2.1e-17 92.4 84 58.3
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 2.7e-17 92.0 88 52.3
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 3.5e-17 91.7 85 51.8
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 6.0e-17 90.9 84 54.8
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 7.9e-17 90.5 90 55.6
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 7.9e-17 90.5 84 54.8
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.3e-16 89.7 88 53.4
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.8e-16 89.4 84 53.6
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.3e-16 89.0 91 56.0
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.3e-16 89.0 91 56.0
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 6.7e-16 87.4 79 58.2
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 8.7e-16 87.0 84 56.0
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 1.9e-15 85.9 89 48.3
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 2.5e-15 85.5 93 52.7
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 5.6e-15 84.3 84 52.4
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 9.6e-15 83.6 98 49.0
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.3e-14 83.2 92 51.1
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.6e-14 82.8 84 52.4
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 2.8e-14 82.0 83 51.8
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 4.8e-14 81.3 83 54.2
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 5.3e-13 77.8 81 50.6
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 5.3e-13 77.8 79 54.4
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 1.2e-12 76.6 81 49.4
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 2.9e-11 72.0 93 41.9
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 2.9e-11 72.0 83 48.2
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 8.4e-11 70.5 84 45.2
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 8.4e-11 70.5 84 47.6
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.4e-10 69.7 66 57.6
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 2.5e-10 68.9 83 42.2
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 2.5e-10 68.9 83 42.2
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 3.2e-10 68.6 94 44.7
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 5.5e-10 67.8 83 41.0
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 5.5e-10 67.8 83 41.0
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 5.5e-10 67.8 83 41.0
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 2.7e-09 65.5 83 41.0
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 3.5e-09 65.1 83 39.8
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 4.6e-09 64.7 83 43.4
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 6.0e-09 64.3 79 45.6
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 1.0e-08 63.5 83 42.2
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 2.3e-08 62.4 79 43.0
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 3.9e-08 61.6 83 39.8
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 3.9e-08 61.6 83 39.8
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 5.1e-08 61.2 83 41.0
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 5.1e-08 61.2 83 39.8
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 1.9e-07 59.3 83 38.6
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 7.4e-07 57.4 83 37.3


User provided reference genes

Program Settings