Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126891 Rosa chinensis HOM05D007466 ORTHO05D002463 4.0e-47 191.0 94 100.0
FvH4_6g26390 Fragaria vesca HOM05D007466 ORTHO05D002463 1.4e-44 182.6 94 94.7
FAN02G3170 Fragaria x ananassa HOM05D007466 ORTHO05D002463 2.4e-44 181.8 94 93.6
FAN09G2303 Fragaria x ananassa HOM05D007466 ORTHO05D002463 9.3e-44 179.9 94 92.6
FAN05G5633 Fragaria x ananassa HOM05D007466 ORTHO05D002463 3.5e-43 177.9 94 92.6
Sabra17G0024500 Salix brachista HOM05D007466 ORTHO05D002463 1.4e-36 156.0 93 78.5
Atru.chr6.3156 Acer truncatum HOM05D007466 ORTHO05D002463 2.4e-36 155.2 93 76.3
Cfa014433 Carpinus fangiana HOM05D007466 ORTHO05D002463 4.2e-36 154.5 93 77.4
Prupe.3G131400 Prunus persica HOM05D007466 ORTHO05D002463 5.4e-36 154.1 93 76.3
Haze_12891 Corylus avellana HOM05D007466 ORTHO05D002463 7.1e-36 153.7 93 76.3
Dinv02746 Davidia involucrata HOM05D007466 ORTHO05D002463 9.3e-36 153.3 92 79.3
Dinv18525 Davidia involucrata HOM05D007466 ORTHO05D002463 9.3e-36 153.3 92 79.3
CiPaw.04G117300 Carya illinoinensis HOM05D007466 ORTHO05D002463 1.6e-35 152.5 93 76.3
QL08p033690 Quercus lobata HOM05D007466 ORTHO05D002463 2.7e-35 151.8 92 76.1
CSS0024645 Camellia sinensis var. sinensis HOM05D007466 ORTHO05D002463 3.5e-35 151.4 92 77.2
MD09G1246300 Malus domestica HOM05D007466 ORTHO05D002463 3.5e-35 151.4 93 74.2
Potri.017G037600 Populus trichocarpa HOM05D007466 ORTHO05D002463 6.0e-35 150.6 94 74.5
Actinidia32076 Actinidia chinensis HOM05D007466 ORTHO05D002463 7.9e-35 150.2 92 76.1
Lj3g0019012 Lotus japonicus HOM05D007466 ORTHO05D002463 1.0e-34 149.8 93 74.2
Prupe.3G219500 Prunus persica HOM05D007466 ORTHO05D002463 1.3e-34 149.4 93 73.1
CSS0032012 Camellia sinensis var. sinensis HOM05D007466 ORTHO05D002463 1.8e-34 149.1 92 76.1
FAN05G5573 Fragaria x ananassa HOM05D007466 ORTHO05D002463 3.9e-34 147.9 93 74.2
EL10Ac2g04092 Beta vulgaris HOM05D007466 ORTHO05D002463 8.7e-34 146.7 92 69.6
RcHm_v2.0_Chr2g0159951 Rosa chinensis HOM05D007466 ORTHO05D002463 1.1e-33 146.4 93 73.1
DCAR_021185 Daucus carota HOM05D007466 ORTHO05D002463 1.9e-33 145.6 92 75.0
Manes.13G072400 Manihot esculenta HOM05D007466 ORTHO05D002463 1.9e-33 145.6 92 71.7
FAN14G1602 Fragaria x ananassa HOM05D007466 ORTHO05D002463 2.5e-33 145.2 93 73.1
FvH4_6g43480 Fragaria vesca HOM05D007466 ORTHO05D002463 3.3e-33 144.8 93 73.1
FAN09G4112 Fragaria x ananassa HOM05D007466 ORTHO05D002463 3.3e-33 144.8 93 72.0
Gohir.D12G159200 Gossypium hirsutum HOM05D007466 ORTHO05D002463 3.3e-33 144.8 93 73.1
Gorai.008G172300 Gossypium raimondii HOM05D007466 ORTHO05D002463 3.3e-33 144.8 93 73.1
FAN02G1346 Fragaria x ananassa HOM05D007466 ORTHO05D002463 4.3e-33 144.4 93 73.1
Ca_01590_v3 Cicer arietinum L. HOM05D007466 ORTHO05D002463 5.6e-33 144.1 92 70.7
Thecc.02G312400 Theobroma cacao HOM05D007466 ORTHO05D002463 5.6e-33 144.1 91 73.6
Gohir.A12G156100 Gossypium hirsutum HOM05D007466 ORTHO05D002463 7.4e-33 143.7 93 71.0
Ah.10g035420 Amaranthus hybridus HOM05D007466 ORTHO05D002463 9.6e-33 143.3 92 66.3
Lsat_1_v5_gn_5_103881 Lactuca sativa HOM05D007466 ORTHO05D002463 9.6e-33 143.3 94 71.3
MD17G1239100 Malus domestica HOM05D007466 ORTHO05D002463 1.3e-32 142.9 93 69.9
Ciclev10017724m.g Citrus clementina HOM05D007466 ORTHO05D002463 1.6e-32 142.5 92 72.8
arahy.Tifrunner.gnm1.ann1.N3UINY Arachis hypogaea HOM05D007466 ORTHO05D002463 2.1e-32 142.1 92 70.7
Phvul.005G113900 Phaseolus vulgaris HOM05D007466 ORTHO05D002463 2.1e-32 142.1 90 71.1
TPR.G4193 Trifolium pratense HOM05D007466 ORTHO05D002463 2.1e-32 142.1 86 76.7
GSVIVG01030614001 Vitis vinifera HOM05D007466 ORTHO05D002463 2.8e-32 141.7 92 69.6
Duzib251G0094 Durio zibethinus HOM05D007466 ORTHO05D002463 3.7e-32 141.4 92 69.6
HanXRQChr14g0459021 Helianthus annuus HOM05D007466 ORTHO05D002463 4.8e-32 141.0 92 71.7
PGR042G2713 Punica granatum HOM05D007466 ORTHO05D002463 4.8e-32 141.0 92 71.7
Medtr2g088760 Medicago truncatula HOM05D007466 ORTHO05D002463 8.1e-32 140.2 87 73.6
Cc00_g30040 Coffea canephora HOM05D007466 ORTHO05D002463 3.1e-31 138.3 89 70.8
Oeu048075.1 Olea europaea HOM05D007466 ORTHO05D002463 3.1e-31 138.3 92 68.5
Rhsim06G0158700 Rhododendron simsii HOM05D007466 ORTHO05D002463 3.1e-31 138.3 92 75.0
VMungo1080G0180 Vigna mungo HOM05D007466 ORTHO05D002463 3.1e-31 138.3 90 70.0
Nitab4.5_0005894g0010 Nicotiana tabacum HOM05D007466 ORTHO05D002463 4.0e-31 137.9 92 68.5
CANSAT64G0630 Cannabis sativa HOM05D007466 ORTHO05D002463 5.3e-31 137.5 84 77.4
Eucgr.A01722 Eucalyptus grandis HOM05D007466 ORTHO05D002463 5.3e-31 137.5 91 69.2
ClCG02G001800 Citrullus lanatus HOM05D007466 ORTHO05D002463 9.0e-31 136.7 91 70.3
COL.COLO4_27678 Corchorus olitorius HOM05D007466 ORTHO05D002463 9.0e-31 136.7 92 69.6
Lalb_Chr22g0349591 Lupinus albus HOM05D007466 ORTHO05D002463 9.0e-31 136.7 94 67.0
CAN.G921.12 Capsicum annuum HOM05D007466 ORTHO05D002463 1.2e-30 136.3 90 70.0
TWI36G1433 Tripterygium wilfordii HOM05D007466 ORTHO05D002463 1.2e-30 136.3 92 68.5
Psat5g265200 Pisum sativum HOM05D007466 ORTHO05D002463 2.0e-30 135.6 86 70.9
MD01G1026100 Malus domestica HOM05D007466 ORTHO05D002463 4.5e-30 134.4 92 69.6
Psat2g121080 Pisum sativum HOM05D007466 ORTHO05D002463 4.5e-30 134.4 93 67.7
Sed0014854 Sechium edule HOM05D007466 ORTHO05D002463 5.8e-30 134.0 87 71.3
MELO3C018805.2 Cucumis melo HOM05D007466 ORTHO05D002463 2.2e-29 132.1 91 72.5
Lj1C757T0 Lonicera japonica HOM05D007466 ORTHO05D002463 2.9e-29 131.7 90 64.4
Solyc07g052500.1 Solanum lycopersicum HOM05D007466 ORTHO05D002463 4.9e-29 131.0 92 66.3
PSO541G5792 Papaver somniferum HOM05D007466 ORTHO05D002463 6.4e-29 130.6 87 69.0
PSO675G1565 Papaver somniferum HOM05D007466 ORTHO05D002463 6.4e-29 130.6 87 69.0
CsaV3_7G003740 Cucumis sativus L. HOM05D007466 ORTHO05D002463 8.4e-29 130.2 93 68.8
THA.LOC104801548 Tarenaya hassleriana HOM05D007466 ORTHO05D002463 1.6e-27 125.9 92 60.9
BcaB02g10474 Brassica carinata HOM05D007466 ORTHO05D002463 2.1e-27 125.6 92 60.9
Nn1g07029 Nelumbo nucifera HOM05D007466 ORTHO05D002463 2.1e-27 125.6 95 65.3
Sp4g14720 Schrenkiella parvula HOM05D007466 ORTHO05D002463 2.1e-27 125.6 92 60.9
BraA05t20253Z Brassica rapa HOM05D007466 ORTHO05D002463 3.5e-27 124.8 92 62.0
AT2G32350 Arabidopsis thaliana HOM05D007466 ORTHO05D002463 4.6e-27 124.4 92 59.8
BcaC02g11328 Brassica carinata HOM05D007466 ORTHO05D002463 4.6e-27 124.4 92 60.9
A05p13150 Brassica napus HOM05D007466 ORTHO05D002463 4.6e-27 124.4 92 60.9
C04p17280 Brassica napus HOM05D007466 ORTHO05D002463 4.6e-27 124.4 92 60.9
BolC4t23280H Brassica oleracea HOM05D007466 ORTHO05D002463 4.6e-27 124.4 92 60.9
Sc06g0006090 Simmondsia chinensis HOM05D007466 ORTHO05D002463 4.6e-27 124.4 90 65.6
Aqoxy4G01992 Aquilegia oxysepala HOM05D007466 ORTHO05D002463 6.0e-27 124.0 91 61.5
CARHR126170 Cardamine hirsuta HOM05D007466 ORTHO05D002463 7.9e-27 123.6 92 60.9
Thhalv10002923m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 7.9e-27 123.6 92 59.8
Thhalv10017634m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 3.9e-26 121.3 92 58.7
AL125U10032 Arabidopsis lyrata HOM05D007466 ORTHO05D002463 5.1e-26 120.9 92 58.7
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 1.1e-25 119.8 90 60.0
Carub.0004s1370 Capsella rubella HOM05D007466 ORTHO05D002463 5.6e-25 117.5 92 56.5
Manes.13G072500 Manihot esculenta HOM05D007466 ORTHO05D002463 3.1e-23 111.7 84 60.7
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.0e-21 106.7 90 57.8
SHI54719 Sapria himalayana HOM05D007466 ORTHO05D002463 4.9e-21 104.4 84 56.0
Rhsim06G0158800 Rhododendron simsii HOM05D007466 ORTHO05D002463 1.6e-19 99.4 66 71.2
unitig_578.g16773 Utricularia gibba HOM05D007466 ORTHO05D002463 4.6e-19 97.8 78 52.6
SGA_v2.0_scaffold49G18335 Striga asiatica HOM05D003065 ORTHO05D003802 2.3e-18 95.5 90 47.8
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 3.1e-15 85.1 67 55.2
CDE05G0337 Ceratophyllum demersum HOM05D007466 ORTHO05D002463 3.8e-13 78.2 83 45.8
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 6.3e-08 60.8 88 39.8
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 1.1e-07 60.1 95 34.7
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 1.1e-07 60.1 95 34.7
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 1.1e-07 60.1 95 34.7
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 1.1e-07 60.1 86 41.9
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 1.8e-07 59.3 88 38.6
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 4.1e-07 58.2 88 38.6
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 5.3e-07 57.8 85 36.5
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 5.3e-07 57.8 85 36.5
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 5.3e-07 57.8 86 40.7
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 5.3e-07 57.8 86 40.7
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 6.9e-07 57.4 85 36.5
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 6.9e-07 57.4 85 36.5
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 6.9e-07 57.4 85 36.5
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 6.9e-07 57.4 86 39.5
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 6.9e-07 57.4 86 34.9
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 9.1e-07 57.0 85 40.0
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.2e-06 56.6 68 41.2
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 1.2e-06 56.6 85 35.3
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 1.2e-06 56.6 85 35.3
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 1.2e-06 56.6 85 35.3
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 1.2e-06 56.6 86 39.5
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 1.2e-06 56.6 64 42.2
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 1.2e-06 56.6 86 37.2
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.5e-06 56.2 85 36.5
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 1.5e-06 56.2 85 38.8
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 1.5e-06 56.2 86 38.4
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 1.5e-06 56.2 85 40.0
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 2.0e-06 55.8 84 39.3
Hma1.2p1_0249F.1_g102440 Hydrangea macrophylla HOM05D007466 ORTHO05D002463 2.0e-06 55.8 38 76.3
Hma1.2p1_2032F.1_g311833 Hydrangea macrophylla HOM05D007466 ORTHO05D002463 2.0e-06 55.8 38 76.3
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 2.0e-06 55.8 68 41.2
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 2.6e-06 55.5 68 39.7
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 2.6e-06 55.5 86 37.2
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 2.6e-06 55.5 74 35.1
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.4e-06 55.1 68 39.7
Ca_10980_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 4.5e-06 54.7 62 45.2
Ca_11000_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 4.5e-06 54.7 62 45.2
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 4.5e-06 54.7 86 36.0
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 4.5e-06 54.7 85 38.8
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 4.5e-06 54.7 70 40.0
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 4.5e-06 54.7 81 37.0
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 5.9e-06 54.3 85 37.6
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 5.9e-06 54.3 82 34.1
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 7.7e-06 53.9 85 36.5
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 7.7e-06 53.9 87 33.3
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 7.7e-06 53.9 81 35.8


User provided reference genes

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