Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 1.3e-135 486.5 262 100.0
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.2e-59 234.2 216 67.1
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 9.8e-59 231.1 258 58.1
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 5.9e-56 221.9 211 65.4
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 9.5e-54 214.5 252 53.2
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.3e-52 209.9 212 67.9
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 8.9e-44 181.4 228 50.4
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.4e-43 179.1 232 49.1
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.4e-43 179.1 232 49.1
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 5.8e-43 178.7 215 56.3
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 2.2e-42 176.8 236 47.9
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 3.7e-42 176.0 236 47.0
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 8.3e-42 174.9 244 48.4
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 2.0e-40 170.2 220 57.3
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.0e-39 166.4 229 52.4
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 3.0e-39 166.4 210 49.0
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.9e-38 163.7 239 43.9
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.3e-38 162.5 230 48.7
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 4.3e-38 162.5 230 50.9
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 1.2e-37 161.0 214 53.3
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.1e-37 160.2 223 48.9
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.1e-37 160.2 235 44.7
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 6.2e-37 158.7 228 48.2
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 8.0e-37 158.3 233 45.1
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.1e-36 157.9 226 49.1
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.4e-36 157.5 236 49.6
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 2.3e-36 156.8 207 45.4
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.0e-36 156.0 221 47.1
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 6.8e-36 155.2 216 51.4
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.5e-35 154.1 256 41.8
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 1.5e-35 154.1 221 47.1
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 2.0e-35 153.7 230 49.1
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 4.4e-35 152.5 232 44.4
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 4.4e-35 152.5 216 48.6
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 7.5e-35 151.8 228 43.4
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 7.5e-35 151.8 217 45.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.3e-34 151.0 225 47.1
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 1.3e-34 151.0 273 41.0
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.7e-34 150.6 220 45.9
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.7e-34 150.6 230 43.9
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 2.9e-34 149.8 236 48.7
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.7e-34 149.4 209 45.9
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 8.3e-34 148.3 230 42.6
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 8.3e-34 148.3 210 42.9
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.1e-33 147.9 264 42.8
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 3.2e-33 146.4 210 43.8
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 3.2e-33 146.4 226 49.1
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 4.1e-33 146.0 228 45.6
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 7.1e-33 145.2 213 46.0
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 9.2e-33 144.8 185 56.2
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 2.1e-32 143.7 224 45.1
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.1e-32 143.7 215 47.4
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 2.1e-32 143.7 214 46.3
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.1e-32 143.7 218 45.9
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.7e-32 143.3 203 45.3
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 4.6e-32 142.5 228 41.2
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 4.6e-32 142.5 210 45.2
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 7.8e-32 141.7 224 42.4
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 7.8e-32 141.7 224 42.4
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.0e-31 141.4 216 42.6
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 1.0e-31 141.4 210 48.1
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-31 140.6 210 47.1
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.7e-31 140.6 210 48.1
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.7e-31 140.6 228 42.5
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 3.9e-31 139.4 200 47.0
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.9e-31 139.4 222 45.5
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 6.6e-31 138.7 231 43.7
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 6.6e-31 138.7 254 42.1
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 8.6e-31 138.3 242 40.5
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 8.6e-31 138.3 206 44.7
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.1e-30 137.9 213 49.8
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.1e-30 137.9 229 48.0
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.5e-30 137.5 212 42.5
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.9e-30 137.1 214 51.4
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.9e-30 137.1 210 43.8
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.9e-30 137.1 252 45.2
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 4.3e-30 136.0 260 44.2
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 1.6e-29 134.0 170 48.2
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.6e-29 134.0 249 40.6
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 2.8e-29 133.3 249 39.4
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 2.8e-29 133.3 249 39.0
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.7e-29 132.5 259 42.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.7e-29 132.5 215 47.0
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 6.2e-29 132.1 216 41.7
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 2.3e-28 130.2 216 40.7
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 3.1e-28 129.8 221 45.2
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 6.8e-28 128.6 189 40.2
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 6.8e-28 128.6 189 40.2
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 6.8e-28 128.6 239 42.3
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 6.8e-28 128.6 181 45.9
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 8.9e-28 128.3 235 41.3
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 8.9e-28 128.3 114 60.5
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 8.9e-28 128.3 116 57.8
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.2e-27 127.9 240 45.4
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 2.6e-27 126.7 105 61.0
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.6e-27 126.7 91 69.2
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 2.6e-27 126.7 201 45.8
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 2.6e-27 126.7 202 44.6
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.4e-27 126.3 221 43.9
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.4e-27 125.9 240 45.8
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 4.4e-27 125.9 205 43.9
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.8e-27 125.6 205 46.3
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 9.9e-27 124.8 87 70.1
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.3e-26 124.4 209 42.1
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.3e-26 124.4 90 66.7
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.3e-26 124.4 242 42.6
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.2e-26 123.6 206 45.1
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 3.7e-26 122.9 203 39.4
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 3.7e-26 122.9 203 39.4
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 3.7e-26 122.9 107 59.8
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 3.7e-26 122.9 234 45.3
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 6.4e-26 122.1 96 64.6
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.4e-26 122.1 212 43.9
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 8.3e-26 121.7 224 41.5
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.1e-25 121.3 204 45.1
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 1.4e-25 120.9 236 41.1
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 5.4e-25 119.0 90 62.2
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 9.2e-25 118.2 235 40.4
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.6e-24 117.5 215 39.5
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 4.6e-24 115.9 205 39.0
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.0e-23 114.8 208 38.5
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.3e-23 114.4 234 39.3
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 3.0e-23 113.2 165 41.2
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 3.0e-23 113.2 196 37.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 3.9e-23 112.8 99 63.6
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 8.6e-23 111.7 236 37.7
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 1.9e-22 110.5 242 40.9
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 3.6e-21 106.3 93 57.0
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.4e-20 104.4 254 40.6
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.4e-20 104.4 105 51.4
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 8.9e-20 101.7 71 67.6
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.0e-19 100.5 101 53.5
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 5.8e-19 99.0 88 58.0
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 5.8e-19 99.0 101 53.5
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 2.2e-18 97.1 92 57.6
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.1e-17 94.7 76 57.9
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 6.0e-16 89.0 91 48.4
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 3.0e-15 86.7 210 35.7
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 3.3e-14 83.2 84 53.6
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.0e-11 73.9 194 38.1
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 1.1e-09 68.2 146 37.0
FAN05G0487 Fragaria x ananassa HOM05D004801 ORTHO05D005747 4.2e-09 66.2 133 44.4
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 6.0e-08 62.4 158 31.6
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 4.3e-06 56.2 86 41.9
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 7.3e-06 55.5 155 33.5


User provided reference genes

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