Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126511 Rosa chinensis HOM05D003439 ORTHO05D025162 1.0e-57 226.5 112 100.0
RcHm_v2.0_Chr1g0335231 Rosa chinensis HOM05D003439 ORTHO05D004062 2.2e-47 192.2 97 97.9
RcHm_v2.0_Chr2g0118851 Rosa chinensis HOM05D003439 ORTHO05D004062 2.2e-47 192.2 97 97.9
RcHm_v2.0_Chr4g0396851 Rosa chinensis HOM05D003439 ORTHO05D004062 2.2e-47 192.2 97 97.9
RcHm_v2.0_Chr6g0268661 Rosa chinensis HOM05D003439 ORTHO05D004062 2.2e-47 192.2 97 97.9
RcHm_v2.0_Chr6g0277741 Rosa chinensis HOM05D003439 ORTHO05D004062 2.2e-47 192.2 97 97.9
RcHm_v2.0_Chr5g0011001 Rosa chinensis HOM05D003439 ORTHO05D004062 4.8e-47 191.0 97 96.9
RcHm_v2.0_Chr7g0198761 Rosa chinensis HOM05D003439 ORTHO05D004062 6.3e-47 190.7 97 96.9
RcHm_v2.0_Chr3g0496911 Rosa chinensis HOM05D003439 ORTHO05D025162 4.1e-22 108.2 57 93.0
Psat3g162480 Pisum sativum HOM05D003439 ORTHO05D004062 1.5e-19 99.8 120 46.7
Psat3g162520 Pisum sativum HOM05D003439 ORTHO05D004062 1.5e-19 99.8 120 46.7
RcHm_v2.0_Chr2g0159271 Rosa chinensis HOM05D003439 ORTHO05D004062 2.3e-17 92.4 165 38.8
Oeu041919.3 Olea europaea HOM05D003439 ORTHO05D004062 6.7e-17 90.9 166 36.7
Dinv39712 Davidia involucrata HOM05D003439 ORTHO05D004062 8.8e-17 90.5 166 37.3
MD09G1109000 Malus domestica HOM05D003439 ORTHO05D004062 8.8e-17 90.5 165 37.6
MD17G1097000 Malus domestica HOM05D003439 ORTHO05D004062 8.8e-17 90.5 165 37.6
SGA_v2.0_scaffold70G23396 Striga asiatica HOM05D003439 ORTHO05D004062 1.2e-16 90.1 151 37.1
ClCG02G008740 Citrullus lanatus HOM05D003439 ORTHO05D004062 2.6e-16 89.0 167 35.3
SalBow7G1393 Salvia bowleyana HOM05D003439 ORTHO05D004062 2.6e-16 89.0 166 35.5
Ciclev10014908m.g Citrus clementina HOM05D003439 ORTHO05D004062 3.3e-16 88.6 165 35.8
CANSAT64G1323 Cannabis sativa HOM05D003439 ORTHO05D004062 4.4e-16 88.2 165 35.8
Duzib248G0706 Durio zibethinus HOM05D003439 ORTHO05D004062 4.4e-16 88.2 165 35.8
FAN02G4351 Fragaria x ananassa HOM05D003439 ORTHO05D004062 5.7e-16 87.8 171 36.8
Gohir.D02G133600 Gossypium hirsutum HOM05D003439 ORTHO05D004062 5.7e-16 87.8 165 36.4
Gorai.005G149600 Gossypium raimondii HOM05D003439 ORTHO05D004062 5.7e-16 87.8 165 36.4
Medtr4g048220 Medicago truncatula HOM05D003439 ORTHO05D004062 5.7e-16 87.8 165 35.8
Prupe.3G217100 Prunus persica HOM05D003439 ORTHO05D004062 5.7e-16 87.8 165 37.6
VMungo1127G2094 Vigna mungo HOM05D003439 ORTHO05D004062 5.7e-16 87.8 165 35.8
Cfa014399 Carpinus fangiana HOM05D003439 ORTHO05D004062 7.5e-16 87.4 166 34.3
Haze_12863 Corylus avellana HOM05D003439 ORTHO05D004062 7.5e-16 87.4 166 34.3
Psat0s800g0080 Pisum sativum HOM05D003439 ORTHO05D004062 7.5e-16 87.4 139 39.6
TWI36G1050 Tripterygium wilfordii HOM05D003439 ORTHO05D004062 7.5e-16 87.4 166 35.5
Cpa.g.sc87.77 Carica papaya HOM05D003439 ORTHO05D004062 9.7e-16 87.0 166 34.9
DCAR_019274 Daucus carota HOM05D003439 ORTHO05D004062 9.7e-16 87.0 165 37.0
Gohir.A03G108400 Gossypium hirsutum HOM05D003439 ORTHO05D004062 9.7e-16 87.0 165 36.4
Lalb_Chr19g0135881 Lupinus albus HOM05D003439 ORTHO05D004062 9.7e-16 87.0 165 35.8
Thecc.02G314800 Theobroma cacao HOM05D003439 ORTHO05D004062 9.7e-16 87.0 165 35.2
CiPaw.03G159900 Carya illinoinensis HOM05D003439 ORTHO05D004062 1.3e-15 86.7 166 34.9
ECA232G2998 Erigeron canadensis HOM05D003439 ORTHO05D004062 1.3e-15 86.7 166 35.5
HanXRQChr05g0144141 Helianthus annuus HOM05D003439 ORTHO05D004062 1.3e-15 86.7 166 33.7
Cc05_g04590 Coffea canephora HOM05D003439 ORTHO05D004062 1.7e-15 86.3 166 36.1
Duzib251G0240 Durio zibethinus HOM05D003439 ORTHO05D004062 1.7e-15 86.3 165 35.2
Lj3g0022714 Lotus japonicus HOM05D003439 ORTHO05D004062 1.7e-15 86.3 165 34.5
Peaxi162Scf00389g00814 Petunia axillaris HOM05D003439 ORTHO05D004062 1.7e-15 86.3 166 34.9
Psat7g157240 Pisum sativum HOM05D003439 ORTHO05D004062 1.7e-15 86.3 165 35.2
Potri.002G229100 Populus trichocarpa HOM05D003439 ORTHO05D004062 1.7e-15 86.3 166 36.1
Glyma.12G098800 Glycine max HOM05D003439 ORTHO05D004062 2.2e-15 85.9 165 35.2
A09p67580 Brassica napus HOM05D003439 ORTHO05D004062 2.8e-15 85.5 148 35.8
Nitab4.5_0001213g0070 Nicotiana tabacum HOM05D003439 ORTHO05D004062 2.8e-15 85.5 166 34.3
Nitab4.5_0006567g0010 Nicotiana tabacum HOM05D003439 ORTHO05D004062 2.8e-15 85.5 166 34.3
Sed0015779 Sechium edule HOM05D003439 ORTHO05D004062 2.8e-15 85.5 165 33.9
Solyc11g072460.2 Solanum lycopersicum HOM05D003439 ORTHO05D004062 2.8e-15 85.5 166 34.3
Solyc12g005870.3 Solanum lycopersicum HOM05D003439 ORTHO05D004062 3.7e-15 85.1 166 33.7
arahy.Tifrunner.gnm1.ann1.N0VMF0 Arachis hypogaea HOM05D003439 ORTHO05D004062 4.8e-15 84.7 165 35.2
arahy.Tifrunner.gnm1.ann1.S34EA0 Arachis hypogaea HOM05D003439 ORTHO05D004062 4.8e-15 84.7 165 35.2
COL.COLO4_27713 Corchorus olitorius HOM05D003439 ORTHO05D004062 4.8e-15 84.7 165 36.4
MELO3C019269.2 Cucumis melo HOM05D003439 ORTHO05D004062 4.8e-15 84.7 165 33.9
CsaV3_2G034930 Cucumis sativus L. HOM05D003439 ORTHO05D004062 4.8e-15 84.7 165 33.9
Migut.M00436 Erythranthe guttata HOM05D003439 ORTHO05D004062 4.8e-15 84.7 166 34.3
FAN09G3949 Fragaria x ananassa HOM05D003439 ORTHO05D004062 4.8e-15 84.7 165 37.0
Potri.014G153500 Populus trichocarpa HOM05D003439 ORTHO05D004062 4.8e-15 84.7 166 36.1
Sopen11g030100 Solanum pennellii HOM05D003439 ORTHO05D004062 4.8e-15 84.7 166 34.3
Sopen12g001820 Solanum pennellii HOM05D003439 ORTHO05D004062 4.8e-15 84.7 166 33.7
BcaB02g10470 Brassica carinata HOM05D003439 ORTHO05D004062 6.3e-15 84.3 165 33.3
CAN.G553.19 Capsicum annuum HOM05D003439 ORTHO05D004062 6.3e-15 84.3 166 33.7
Eucgr.A01128 Eucalyptus grandis HOM05D003439 ORTHO05D004062 6.3e-15 84.3 165 35.2
Glyma.06G305800 Glycine max HOM05D003439 ORTHO05D004062 6.3e-15 84.3 165 34.5
Phvul.011G103600 Phaseolus vulgaris HOM05D003439 ORTHO05D004062 6.3e-15 84.3 165 33.9
GSVIVG01030423001 Vitis vinifera HOM05D003439 ORTHO05D004062 6.3e-15 84.3 165 34.5
Ca_26960_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 8.2e-15 84.0 165 34.5
Ca_29946_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 8.2e-15 84.0 165 34.5
Sabra14G0116100 Salix brachista HOM05D003439 ORTHO05D004062 8.2e-15 84.0 166 36.1
Sed0026537 Sechium edule HOM05D003439 ORTHO05D004062 8.2e-15 84.0 165 33.3
FAN05G3766 Fragaria x ananassa HOM05D003439 ORTHO05D004062 1.1e-14 83.6 165 36.4
PGSC0003DMG400027403 Solanum tuberosum HOM05D003439 ORTHO05D004062 1.1e-14 83.6 166 33.7
Sabra02G0175100 Salix brachista HOM05D003439 ORTHO05D004062 1.4e-14 83.2 166 35.5
MSTRG.6579 Avicennia marina HOM05D003439 ORTHO05D004062 1.8e-14 82.8 166 34.3
FvH4_6g43170 Fragaria vesca HOM05D003439 ORTHO05D004062 1.8e-14 82.8 165 36.4
FAN14G2769 Fragaria x ananassa HOM05D003439 ORTHO05D004062 1.8e-14 82.8 165 36.4
QL08p033044 Quercus lobata HOM05D003439 ORTHO05D004062 1.8e-14 82.8 166 33.1
TPR.G4641 Trifolium pratense HOM05D003439 ORTHO05D004062 1.8e-14 82.8 165 33.9
CSS0041453 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 2.4e-14 82.4 166 34.3
PGR042G0375 Punica granatum HOM05D003439 ORTHO05D004062 2.4e-14 82.4 165 33.9
Sp4g14780 Schrenkiella parvula HOM05D003439 ORTHO05D004062 2.4e-14 82.4 158 32.9
CAN.G80.46 Capsicum annuum HOM05D003439 ORTHO05D004062 3.1e-14 82.0 166 33.1
Lj1C765G0 Lonicera japonica HOM05D003439 ORTHO05D004062 3.1e-14 82.0 187 33.2
THA.LOC104800990 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 3.1e-14 82.0 165 32.7
Actinidia27265 Actinidia chinensis HOM05D003439 ORTHO05D004062 4.1e-14 81.6 172 35.5
A05p13180 Brassica napus HOM05D003439 ORTHO05D004062 4.1e-14 81.6 165 32.7
BraA05t20259Z Brassica rapa HOM05D003439 ORTHO05D004062 4.1e-14 81.6 165 32.7
Aa31LG1G19570 Aethionema arabicum HOM05D003439 ORTHO05D004062 5.3e-14 81.3 165 32.7
BcaC02g11324 Brassica carinata HOM05D003439 ORTHO05D004062 5.3e-14 81.3 165 32.7
BcaNung05930 Brassica carinata HOM05D003439 ORTHO05D004062 5.3e-14 81.3 165 32.1
C04p17240 Brassica napus HOM05D003439 ORTHO05D004062 5.3e-14 81.3 165 32.7
BolC4t23276H Brassica oleracea HOM05D003439 ORTHO05D004062 5.3e-14 81.3 165 32.7
Aqoxy1G02139 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 7.0e-14 80.9 165 35.2
Aqoxy2G04140 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 7.0e-14 80.9 165 33.3
EL10Ac8g19506 Beta vulgaris HOM05D003439 ORTHO05D004062 1.2e-13 80.1 165 33.3
Thhalv10016512m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 1.2e-13 80.1 165 32.1
BraA09t42091Z Brassica rapa HOM05D003439 ORTHO05D004062 1.6e-13 79.7 165 32.1
CSS0047283 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 1.6e-13 79.7 166 33.7
AT1G05180 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 2.0e-13 79.3 166 31.9
BolC8t52726H Brassica oleracea HOM05D003439 ORTHO05D004062 2.0e-13 79.3 165 32.1
TAR627G1083 Trochodendron aralioides HOM05D003439 ORTHO05D004062 2.0e-13 79.3 167 32.3
BcaC07g36858 Brassica carinata HOM05D003439 ORTHO05D004062 2.7e-13 79.0 165 31.5
A10p03710 Brassica napus HOM05D003439 ORTHO05D004062 2.7e-13 79.0 165 31.5
BraA10t42644Z Brassica rapa HOM05D003439 ORTHO05D004062 2.7e-13 79.0 165 31.5
Carub.0001s0445 Capsella rubella HOM05D003439 ORTHO05D004062 2.7e-13 79.0 165 31.5
Sc21g0001430 Simmondsia chinensis HOM05D003439 ORTHO05D004062 2.7e-13 79.0 165 33.3
THA.LOC104816043 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 2.7e-13 79.0 165 32.1
AL4G27800 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 3.5e-13 78.6 165 32.1
C08p51960 Brassica napus HOM05D003439 ORTHO05D004062 4.5e-13 78.2 163 31.9
Manes.12G066600 Manihot esculenta HOM05D003439 ORTHO05D004062 4.5e-13 78.2 165 33.3
C05p03410 Brassica napus HOM05D003439 ORTHO05D004062 5.9e-13 77.8 165 30.9
BolC5t29120H Brassica oleracea HOM05D003439 ORTHO05D004062 5.9e-13 77.8 165 30.9
Thhalv10007362m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 5.9e-13 77.8 165 30.9
A08p36540 Brassica napus HOM05D003439 ORTHO05D004062 7.7e-13 77.4 165 30.9
CARHR004640 Cardamine hirsuta HOM05D003439 ORTHO05D004062 7.7e-13 77.4 165 32.7
CARHR126230 Cardamine hirsuta HOM05D003439 ORTHO05D004062 7.7e-13 77.4 165 32.1
AUR62032477 Chenopodium quinoa HOM05D003439 ORTHO05D004062 7.7e-13 77.4 166 33.1
BraA08t35555Z Brassica rapa HOM05D003439 ORTHO05D004062 1.0e-12 77.0 165 30.3
Atru.chr6.3185 Acer truncatum HOM05D003439 ORTHO05D004062 1.3e-12 76.6 162 32.7
Carub.0004s1376 Capsella rubella HOM05D003439 ORTHO05D004062 1.3e-12 76.6 166 30.7
AUR62043065 Chenopodium quinoa HOM05D003439 ORTHO05D004062 1.3e-12 76.6 166 33.1
PSO541G1862 Papaver somniferum HOM05D003439 ORTHO05D004062 1.3e-12 76.6 165 32.7
PSO675G5573 Papaver somniferum HOM05D003439 ORTHO05D004062 1.3e-12 76.6 165 32.7
AL1G14940 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 1.7e-12 76.3 166 31.3
BcaC07g42149 Brassica carinata HOM05D003439 ORTHO05D004062 2.2e-12 75.9 161 32.3
C08p01780 Brassica napus HOM05D003439 ORTHO05D004062 2.2e-12 75.9 165 30.3
BolC8t46978H Brassica oleracea HOM05D003439 ORTHO05D004062 2.2e-12 75.9 165 30.3
Sp1g04030 Schrenkiella parvula HOM05D003439 ORTHO05D004062 2.2e-12 75.9 165 30.9
SpUn0024_0110 Schrenkiella parvula HOM05D003439 ORTHO05D004062 2.2e-12 75.9 165 30.9
ATR0794G065 Amborella trichopoda HOM05D003439 ORTHO05D004062 3.8e-12 75.1 165 30.9
MBI02_g21885_MAGBIO Magnolia biondii HOM05D003439 ORTHO05D004062 5.0e-12 74.7 165 32.1
TAR629G2369 Trochodendron aralioides HOM05D003439 ORTHO05D004062 5.0e-12 74.7 164 32.3
Nn1g07136 Nelumbo nucifera HOM05D003439 ORTHO05D004062 6.5e-12 74.3 165 31.5
SGA_v2.0_scaffold34G13839 Striga asiatica HOM05D003439 ORTHO05D004062 6.5e-12 74.3 156 34.0
SHI10354 Sapria himalayana HOM05D003439 ORTHO05D004062 3.2e-11 72.0 161 30.4
AT2G32410 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 9.4e-11 70.5 165 29.7
Hund02156 Selenicereus undatus HOM05D003439 ORTHO05D004062 1.6e-10 69.7 163 30.7
HPP92_015981 Vanilla planifolia HOM05D003439 ORTHO05D004062 3.6e-10 68.6 165 30.9
CDE11G0886 Ceratophyllum demersum HOM05D003439 ORTHO05D004062 8.0e-10 67.4 165 27.9
Zm00001eb062550 Zea mays HOM05D003439 ORTHO05D004062 1.8e-09 66.2 165 29.7
Zm00001eb211770 Zea mays HOM05D003439 ORTHO05D004062 4.0e-09 65.1 165 29.1
Hma1.2p1_0032F.1_g018780 Hydrangea macrophylla HOM05D003439 ORTHO05D007904 1.2e-08 63.5 44 65.9
Lsat_1_v5_gn_9_43200 Lactuca sativa HOM05D003439 ORTHO05D004062 1.5e-08 63.2 74 48.6
Manes.12G074303 Manihot esculenta HOM05D003439 ORTHO05D004062 2.0e-08 62.8 72 50.0
Os03g0820100 Oryza sativa ssp. japonica HOM05D003439 ORTHO05D004062 2.6e-08 62.4 165 29.1
Hma1.2p1_0576F.1_g182010 Hydrangea macrophylla HOM05D003439 ORTHO05D004062 7.5e-08 60.8 29 86.2
Hma1.2p1_0257F.1_g103570 Hydrangea macrophylla HOM05D003439 ORTHO05D004062 1.7e-07 59.7 28 85.7
Mapoly0005s0094 Marchantia polymorpha HOM05D003439 ORTHO05D004062 2.2e-07 59.3 162 31.5
CSS0017187 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 6.3e-07 57.8 70 45.7
BolC3t21144H Brassica oleracea HOM05D003439 ORTHO05D004062 8.3e-07 57.4 26 84.6
RcHm_v2.0_Chr6g0280031 Rosa chinensis HOM05D003439 ORTHO05D004062 1.4e-06 56.6 41 63.4
Psat1g032320 Pisum sativum HOM05D003439 ORTHO05D004062 5.4e-06 54.7 32 75.0
SEGI_36291 Sequoiadendron giganteum HOM05D003439 ORTHO05D004062 7.0e-06 54.3 29 72.4


User provided reference genes

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