Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126491 Rosa chinensis HOM05D003462 ORTHO05D003946 9.3e-116 420.2 214 100.0
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.1e-63 247.3 180 78.3
RcHm_v2.0_Chr2g0152701 Rosa chinensis HOM05D003462 ORTHO05D003946 7.0e-63 244.6 216 67.6
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 1.6e-62 243.4 201 71.6
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.6e-62 243.4 201 71.6
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 1.3e-61 240.4 201 70.6
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 7.5e-57 224.6 201 65.7
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 1.7e-56 223.4 201 64.7
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 1.4e-55 220.3 201 63.7
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 1.4e-55 220.3 201 63.7
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 5.4e-55 218.4 201 62.2
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.0e-54 216.5 201 62.7
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 2.0e-54 216.5 205 62.0
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 2.7e-54 216.1 201 62.2
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 2.7e-54 216.1 201 62.2
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 3.5e-54 215.7 231 56.7
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 4.5e-54 215.3 201 62.2
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 4.5e-54 215.3 201 62.7
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 1.0e-53 214.2 200 62.5
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.7e-53 213.4 198 63.1
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.9e-53 212.6 201 61.2
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.8e-53 212.2 198 63.1
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 3.8e-53 212.2 201 60.7
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 5.0e-53 211.8 201 61.2
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 6.5e-53 211.5 201 62.2
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 1.1e-52 210.7 201 60.7
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 1.1e-52 210.7 200 62.0
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 1.5e-52 210.3 201 61.7
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 1.9e-52 209.9 201 59.7
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 1.9e-52 209.9 201 60.2
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 2.5e-52 209.5 201 60.2
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 3.2e-52 209.1 200 61.5
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 3.2e-52 209.1 200 61.5
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 3.2e-52 209.1 200 61.5
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 4.2e-52 208.8 201 61.7
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 4.2e-52 208.8 201 59.7
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 5.5e-52 208.4 200 61.0
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 7.2e-52 208.0 201 58.7
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 7.2e-52 208.0 201 59.2
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 7.2e-52 208.0 201 60.2
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 9.4e-52 207.6 237 54.0
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 9.4e-52 207.6 181 65.2
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 9.4e-52 207.6 198 61.1
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 9.4e-52 207.6 198 61.1
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 9.4e-52 207.6 201 60.7
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 1.2e-51 207.2 198 61.1
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 1.2e-51 207.2 200 60.0
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 1.2e-51 207.2 200 60.0
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 1.6e-51 206.8 201 60.7
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 1.6e-51 206.8 201 59.2
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 1.6e-51 206.8 201 59.7
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 1.6e-51 206.8 201 60.7
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 2.1e-51 206.5 200 59.5
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 4.7e-51 205.3 201 59.7
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 4.7e-51 205.3 194 60.3
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 4.7e-51 205.3 201 59.7
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 6.1e-51 204.9 200 60.5
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 6.1e-51 204.9 201 58.7
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 6.1e-51 204.9 200 58.5
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 8.0e-51 204.5 200 59.5
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 1.4e-50 203.8 201 58.7
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.2e-50 201.8 201 59.2
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 5.2e-50 201.8 201 57.7
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 8.8e-50 201.1 198 57.6
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 8.8e-50 201.1 201 57.7
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 1.2e-49 200.7 201 57.7
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 1.5e-49 200.3 201 60.2
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 1.5e-49 200.3 201 59.7
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 2.0e-49 199.9 201 59.2
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 2.6e-49 199.5 201 58.7
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 3.4e-49 199.1 201 57.7
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 5.7e-49 198.4 201 56.7
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 7.5e-49 198.0 201 58.2
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 9.8e-49 197.6 201 58.2
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 9.8e-49 197.6 201 57.2
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 2.2e-48 196.4 201 56.7
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 2.2e-48 196.4 201 58.2
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 2.2e-48 196.4 201 56.7
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 2.2e-48 196.4 201 56.7
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 2.8e-48 196.1 201 57.7
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 3.7e-48 195.7 201 57.7
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 3.7e-48 195.7 201 57.7
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 4.9e-48 195.3 201 57.7
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 4.9e-48 195.3 201 57.2
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 4.9e-48 195.3 201 57.2
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 4.9e-48 195.3 198 57.1
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 4.9e-48 195.3 201 59.2
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 6.3e-48 194.9 201 56.7
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 8.3e-48 194.5 201 57.7
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 8.3e-48 194.5 201 57.7
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 1.4e-47 193.7 201 57.7
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 1.4e-47 193.7 201 54.7
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 2.4e-47 193.0 200 56.0
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 2.4e-47 193.0 200 56.0
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 3.1e-47 192.6 201 55.7
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 3.1e-47 192.6 201 54.7
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 9.2e-47 191.0 201 58.2
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.2e-46 190.7 201 55.7
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.6e-46 190.3 200 55.5
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 3.5e-46 189.1 201 57.2
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 4.5e-46 188.7 201 55.7
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 4.5e-46 188.7 201 55.7
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 7.7e-46 188.0 201 54.2
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 1.3e-45 187.2 198 57.6
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 5.0e-45 185.3 197 55.8
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 5.0e-45 185.3 209 54.1
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.2e-43 180.6 202 55.4
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 6.1e-43 178.3 198 55.6
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 6.1e-43 178.3 173 59.5
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 1.0e-42 177.6 200 53.5
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.4e-42 177.2 214 49.5
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 1.4e-42 177.2 163 63.8
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 1.8e-42 176.8 164 63.4
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 4.0e-42 175.6 197 54.8
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.8e-42 174.9 184 56.5
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 9.8e-41 171.0 200 52.5
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 1.3e-40 170.6 190 52.1
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 1.3e-40 170.6 210 50.0
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.7e-40 170.2 201 53.7
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 1.8e-39 166.8 291 40.5
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 9.2e-39 164.5 192 53.1
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.6e-38 163.7 177 55.4
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 1.5e-36 157.1 197 50.3
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.5e-36 156.4 162 59.3
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 9.5e-36 154.5 194 49.5
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 4.7e-35 152.1 183 50.8
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 4.7e-35 152.1 162 53.7
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 6.2e-35 151.8 197 48.7
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 6.2e-35 151.8 197 48.7
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 5.2e-34 148.7 201 48.3
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 8.9e-34 147.9 153 54.9
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 1.3e-32 144.1 172 51.2
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 1.1e-31 141.0 192 47.4
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 1.4e-31 140.6 192 46.4
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 1.5e-28 130.6 184 45.7
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.2e-26 122.1 174 48.3
CSS0030762 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.5e-25 120.6 201 42.3
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 3.4e-25 119.4 117 63.2
FAN13G0008 Fragaria x ananassa HOM05D003462 ORTHO05D003946 5.8e-25 118.6 117 64.1
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 1.3e-24 117.5 113 58.4
Medtr4g114810 Medicago truncatula HOM05D003462 ORTHO05D003946 1.3e-24 117.5 162 47.5
RcHm_v2.0_Chr3g0495421 Rosa chinensis HOM05D003462 ORTHO05D003946 2.2e-24 116.7 177 43.5
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 1.4e-23 114.0 93 63.4
FAN18G1391 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.2e-22 110.9 148 52.0
unitig_749.g14105 Utricularia gibba HOM05D003462 ORTHO05D003946 8.6e-21 104.8 117 56.4
Medtr8g022470 Medicago truncatula HOM05D003462 ORTHO05D003946 1.5e-20 104.0 163 44.2
Medtr5g025810 Medicago truncatula HOM05D003462 ORTHO05D003946 2.5e-20 103.2 156 42.9
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 7.3e-20 101.7 146 48.6
Medtr4g123500 Medicago truncatula HOM05D003462 ORTHO05D003946 3.6e-19 99.4 148 39.9
PGSC0003DMG401024517 Solanum tuberosum HOM05D003462 ORTHO05D003946 8.1e-19 98.2 81 63.0
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 1.4e-18 97.4 116 52.6
Medtr4g133130 Medicago truncatula HOM05D000348 ORTHO05D003946 5.2e-18 95.5 155 47.7
RcHm_v2.0_Chr6g0264331 Rosa chinensis HOM05D003462 ORTHO05D003946 3.4e-17 92.8 51 94.1
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 7.6e-17 91.7 76 64.5
Medtr4g130360 Medicago truncatula HOM05D003462 ORTHO05D003946 2.2e-16 90.1 194 35.1
Cre06.g267700 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 8.4e-16 88.2 161 36.0
Dinv36836 Davidia involucrata HOM05D003462 ORTHO05D003946 9.2e-15 84.7 51 86.3
Cfa017729 Carpinus fangiana HOM05D003462 ORTHO05D003946 2.1e-14 83.6 51 84.3
TPR.G35192 Trifolium pratense HOM05D003462 ORTHO05D003946 2.1e-14 83.6 59 72.9
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 3.5e-14 82.8 51 82.4
ECA233G4583 Erigeron canadensis HOM05D003462 ORTHO05D003946 7.8e-14 81.6 140 42.1
Medtr5g082990 Medicago truncatula HOM05D003462 ORTHO05D003946 1.0e-13 81.3 124 43.5
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 2.3e-13 80.1 51 80.4
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 3.0e-13 79.7 94 54.3
ECA236G4192 Erigeron canadensis HOM05D003462 ORTHO05D003946 5.1e-13 79.0 75 60.0
CBR_g31190 Chara braunii HOM05D003462 ORTHO05D003946 8.6e-13 78.2 61 65.6
HanXRQChr09g0240321 Helianthus annuus HOM05D003462 ORTHO05D003946 1.1e-12 77.8 82 54.9
unitig_749.g14106 Utricularia gibba HOM05D003462 ORTHO05D003946 1.9e-12 77.0 79 54.4
HanXRQChr09g0240811 Helianthus annuus HOM05D003462 ORTHO05D003946 7.3e-12 75.1 69 59.4
ATR0559G066 Amborella trichopoda HOM05D003462 ORTHO05D003946 4.0e-10 69.3 62 51.6
COL.COLO4_01124 Corchorus olitorius HOM05D003462 ORTHO05D003946 4.0e-10 69.3 155 32.3
Ca_29357_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 5.2e-10 68.9 159 32.7
Medtr5g083100 Medicago truncatula HOM05D003462 ORTHO05D003946 8.9e-10 68.2 49 61.2
Cfa017727 Carpinus fangiana HOM05D003462 ORTHO05D003946 3.4e-09 66.2 87 46.0
Cre06.g251550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 7.6e-09 65.1 141 29.1
Medtr4g130550 Medicago truncatula HOM05D003462 ORTHO05D003946 1.3e-08 64.3 133 31.6
ECA233G4504 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.1e-07 61.2 67 50.7
FvH4_5g13111 Fragaria vesca HOM05D003462 ORTHO05D003946 1.4e-07 60.8 30 90.0
CSS0003044 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 7.8e-06 55.1 30 80.0
GSVIVG01008180001 Vitis vinifera HOM05D003462 ORTHO05D003946 7.8e-06 55.1 30 80.0


User provided reference genes

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