Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126401 Rosa chinensis HOM05D006713 ORTHO05D008601 4.7e-227 790.8 388 100.0
FAN05G2673 Fragaria x ananassa HOM05D006713 ORTHO05D008601 1.1e-204 716.5 388 91.0
FvH4_6g26190 Fragaria vesca HOM05D006713 ORTHO05D008601 7.4e-204 713.8 386 90.9
FAN09G0901 Fragaria x ananassa HOM05D006713 ORTHO05D008601 5.3e-202 707.6 388 89.7
FAN02G3934 Fragaria x ananassa HOM05D006713 ORTHO05D008601 2.3e-189 665.6 377 87.0
MD17G1241000 Malus domestica HOM05D006713 ORTHO05D008601 3.9e-181 638.3 389 81.0
GSVIVG01020539001 Vitis vinifera HOM05D006713 ORTHO05D008601 7.2e-159 564.3 388 72.2
QL08p038662 Quercus lobata HOM05D006713 ORTHO05D008601 1.8e-157 559.7 377 73.5
Atru.chr6.3001 Acer truncatum HOM05D006713 ORTHO05D008601 4.0e-157 558.5 382 70.9
Dinv26425 Davidia involucrata HOM05D006713 ORTHO05D008601 2.0e-156 556.2 363 73.3
QL02p049491 Quercus lobata HOM05D006713 ORTHO05D008601 3.3e-156 555.4 333 78.4
CSS0037354 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 9.7e-156 553.9 391 69.3
TWI18G1058 Tripterygium wilfordii HOM05D006713 ORTHO05D008601 1.8e-154 549.7 383 68.4
TAR235G0002 Trochodendron aralioides HOM05D006713 ORTHO05D008601 3.5e-153 545.4 383 68.4
CANSAT78G0617 Cannabis sativa HOM05D006713 ORTHO05D008601 2.2e-152 542.7 383 70.2
Gohir.A03G157000 Gossypium hirsutum HOM05D006713 ORTHO05D008601 1.1e-151 540.4 387 66.4
Gohir.D02G180200 Gossypium hirsutum HOM05D006713 ORTHO05D008601 1.5e-151 540.0 387 66.7
Eucgr.A01814 Eucalyptus grandis HOM05D006713 ORTHO05D008601 2.5e-151 539.3 397 65.5
Gorai.005G201900 Gossypium raimondii HOM05D006713 ORTHO05D008601 3.2e-151 538.9 387 66.4
Nn1g06572 Nelumbo nucifera HOM05D006713 ORTHO05D008601 7.2e-151 537.7 387 67.7
Prupe.3G137200 Prunus persica HOM05D006713 ORTHO05D008601 1.8e-149 533.1 384 70.6
Hma1.2p1_1201F.1_g266570 Hydrangea macrophylla HOM05D006713 ORTHO05D008601 2.3e-149 532.7 419 64.2
Actinidia09856 Actinidia chinensis HOM05D006713 ORTHO05D008601 8.8e-149 530.8 370 70.0
Glyma.13G297500 Glycine max HOM05D006713 ORTHO05D008601 3.4e-148 528.9 328 74.4
Lj3g0026133 Lotus japonicus HOM05D006713 ORTHO05D008601 4.8e-147 525.0 379 69.4
Ciclev10015547m.g Citrus clementina HOM05D006713 ORTHO05D008601 6.3e-147 524.6 383 66.1
Rhsim06G0143600 Rhododendron simsii HOM05D006713 ORTHO05D008601 1.2e-145 520.4 392 66.8
CsaV3_6G012990 Cucumis sativus L. HOM05D006713 ORTHO05D008601 1.0e-144 517.3 388 68.3
arahy.Tifrunner.gnm1.ann1.Q4ZJSX Arachis hypogaea HOM05D006713 ORTHO05D008601 2.3e-144 516.2 391 66.8
Duzib052G0863 Durio zibethinus HOM05D006713 ORTHO05D008601 2.3e-144 516.2 338 71.6
vmacro12297 Vaccinium macrocarpon HOM05D006713 ORTHO05D008601 3.3e-143 512.3 393 65.1
arahy.Tifrunner.gnm1.ann1.FW5TAU Arachis hypogaea HOM05D006713 ORTHO05D008601 9.5e-143 510.8 397 65.2
Potri.013G132100 Populus trichocarpa HOM05D006713 ORTHO05D008601 1.2e-142 510.4 386 66.3
THA.LOC104815960 Tarenaya hassleriana HOM05D006713 ORTHO05D008601 1.2e-142 510.4 380 64.7
Peaxi162Scf00132g00240 Petunia axillaris HOM05D006713 ORTHO05D008601 3.6e-142 508.8 362 68.5
Aqoxy1G02470 Aquilegia oxysepala HOM05D006713 ORTHO05D008601 6.1e-142 508.1 397 62.7
Lalb_Chr14g0366891 Lupinus albus HOM05D006713 ORTHO05D008601 8.0e-142 507.7 383 65.8
Medtr2g090335 Medicago truncatula HOM05D006713 ORTHO05D008601 8.9e-141 504.2 335 70.1
VMungo1080G0618 Vigna mungo HOM05D006713 ORTHO05D008601 1.2e-140 503.8 328 71.0
PGSC0003DMG400018345 Solanum tuberosum HOM05D006713 ORTHO05D008601 2.0e-140 503.1 354 67.8
Psat5g271440 Pisum sativum HOM05D006713 ORTHO05D008601 2.6e-140 502.7 326 72.1
Solyc07g054070.4 Solanum lycopersicum HOM05D006713 ORTHO05D008601 4.4e-140 501.9 368 65.8
MBI06_g06484_MAGBIO Magnolia biondii HOM05D006713 ORTHO05D008601 5.7e-140 501.5 395 63.8
Cc05_g07100 Coffea canephora HOM05D006713 ORTHO05D008601 2.8e-139 499.2 367 65.7
Sp1g02570 Schrenkiella parvula HOM05D006713 ORTHO05D008601 6.3e-139 498.0 378 64.3
Sabra13G0111600 Salix brachista HOM05D006713 ORTHO05D008601 7.0e-138 494.6 404 62.6
Cpa.g.sc34.156 Carica papaya HOM05D006713 ORTHO05D008601 9.2e-138 494.2 341 69.2
CAN.G248.32 Capsicum annuum HOM05D006713 ORTHO05D008601 1.0e-136 490.7 385 62.1
ECA234G3347 Erigeron canadensis HOM05D006713 ORTHO05D008601 1.3e-136 490.3 363 64.7
Ah.01g015180 Amaranthus hybridus HOM05D006713 ORTHO05D008601 1.7e-136 490.0 328 69.8
C08p52690 Brassica napus HOM05D006713 ORTHO05D008601 2.9e-136 489.2 383 62.9
Lsat_1_v5_gn_8_133201 Lactuca sativa HOM05D006713 ORTHO05D008601 8.6e-136 487.6 385 62.3
BcaC07g42233 Brassica carinata HOM05D006713 ORTHO05D008601 1.9e-135 486.5 339 68.1
BcaC07g42238 Brassica carinata HOM05D006713 ORTHO05D008601 1.9e-135 486.5 384 62.5
BolC8t52795H Brassica oleracea HOM05D006713 ORTHO05D008601 1.9e-135 486.5 384 62.5
HanXRQChr17g0556501 Helianthus annuus HOM05D006713 ORTHO05D008601 2.5e-135 486.1 353 66.6
BraA09t42160Z Brassica rapa HOM05D006713 ORTHO05D008601 1.4e-133 480.3 385 62.9
Thhalv10007899m.g Eutrema salsugineum HOM05D006713 ORTHO05D008601 1.8e-133 479.9 378 62.2
A09p68250 Brassica napus HOM05D006713 ORTHO05D008601 4.0e-133 478.8 384 63.0
CDE10G0241 Ceratophyllum demersum HOM05D006713 ORTHO05D008601 4.0e-133 478.8 341 66.6
Haze_13156 Corylus avellana HOM05D006713 ORTHO05D008601 4.0e-133 478.8 383 64.0
CARHR003020 Cardamine hirsuta HOM05D006713 ORTHO05D008601 6.8e-133 478.0 379 63.3
Lj8A113G48 Lonicera japonica HOM05D006713 ORTHO05D008601 8.9e-133 477.6 387 62.0
Sc21g0002760 Simmondsia chinensis HOM05D006713 ORTHO05D008601 8.9e-133 477.6 384 61.2
AL1G13180 Arabidopsis lyrata HOM05D006713 ORTHO05D008601 3.4e-132 475.7 373 63.8
MSTRG.12823 Avicennia marina HOM05D006713 ORTHO05D008601 9.8e-132 474.2 391 61.1
AT1G03687 Arabidopsis thaliana HOM05D006713 ORTHO05D008601 1.3e-131 473.8 372 64.0
EL10Ac9g20760 Beta vulgaris HOM05D006713 ORTHO05D008601 5.4e-130 468.4 429 55.7
Aa31LG1G20990 Aethionema arabicum HOM05D006713 ORTHO05D008601 2.7e-129 466.1 368 62.2
Carub.0001s0279 Capsella rubella HOM05D006713 ORTHO05D008601 2.7e-129 466.1 328 67.1
DCAR_021241 Daucus carota HOM05D006713 ORTHO05D008601 6.0e-129 464.9 355 62.8
Migut.H01188 Erythranthe guttata HOM05D006713 ORTHO05D008601 2.3e-128 463.0 371 61.7
Manes.12G089598 Manihot esculenta HOM05D006713 ORTHO05D008601 6.6e-128 461.5 317 71.3
Hund01101 Selenicereus undatus HOM05D006713 ORTHO05D008601 1.2e-124 450.7 422 55.2
AUR62038189 Chenopodium quinoa HOM05D006713 ORTHO05D008601 3.4e-124 449.1 360 60.6
ATR0665G517 Amborella trichopoda HOM05D006713 ORTHO05D008601 5.8e-124 448.4 330 61.5
CSS0039998 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 1.9e-122 443.4 327 65.4
HPP92_023892 Vanilla planifolia HOM05D006713 ORTHO05D008601 3.2e-122 442.6 360 58.6
HPP92_023829 Vanilla planifolia HOM05D006713 ORTHO05D008601 3.9e-120 435.6 361 57.3
ClCG02G017610 Citrullus lanatus HOM05D006713 ORTHO05D008601 2.1e-118 429.9 546 48.0
CiPaw.03G176500 Carya illinoinensis HOM05D006713 ORTHO05D008601 1.4e-117 427.2 289 73.4
PSO541G1719 Papaver somniferum HOM05D006713 ORTHO05D008601 8.9e-117 424.5 379 58.8
PSO675G6747 Papaver somniferum HOM05D006713 ORTHO05D008601 2.6e-116 422.9 379 58.6
Nitab4.5_0002169g0110 Nicotiana tabacum HOM05D006713 ORTHO05D008601 4.4e-116 422.2 384 57.8
Nitab4.5_0000512g0100 Nicotiana tabacum HOM05D006713 ORTHO05D008601 1.4e-114 417.2 378 58.7
Ca_01502_v3 Cicer arietinum L. HOM05D006713 ORTHO05D008601 7.1e-114 414.8 330 61.2
Phvul.005G104000 Phaseolus vulgaris HOM05D006713 ORTHO05D008601 2.7e-113 412.9 262 71.0
Zm00001eb273220 Zea mays HOM05D006713 ORTHO05D008601 1.2e-110 404.1 357 55.2
Sopen07g028010 Solanum pennellii HOM05D006713 ORTHO05D008601 3.6e-110 402.5 262 69.5
Thecc.02G179100 Theobroma cacao HOM05D006713 ORTHO05D008601 2.9e-107 392.9 242 73.1
Sed0026559 Sechium edule HOM05D006713 ORTHO05D008601 3.1e-101 372.9 281 67.3
AUR62038063 Chenopodium quinoa HOM05D006713 ORTHO05D008601 7.1e-98 361.7 364 54.7
unitig_62.g23167 Utricularia gibba HOM05D006713 ORTHO05D008601 1.3e-96 357.5 277 62.1
MELO3C013617.2 Cucumis melo HOM05D006713 ORTHO05D008601 5.3e-93 345.5 388 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1346 Anthoceros agrestis HOM05D006713 ORTHO05D008601 6.4e-91 338.6 338 49.4
Mapoly0088s0019 Marchantia polymorpha HOM05D006713 ORTHO05D008601 8.1e-86 321.6 330 46.7
Os06g0342750 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 7.9e-81 305.1 260 54.2
SGA_v2.0_scaffold109G31136 Striga asiatica HOM05D006713 ORTHO05D007323 2.5e-79 300.1 391 44.8
Glyma.12G203966 Glycine max HOM05D006713 ORTHO05D008601 5.7e-79 298.9 166 77.7
SMO117G0197 Selaginella moellendorffii HOM05D006713 ORTHO05D008601 1.5e-71 274.2 342 41.8
SalBow1G6029 Salvia bowleyana HOM05D006713 ORTHO05D008601 5.3e-69 265.8 215 60.0
CBR_g35040 Chara braunii HOM05D006713 ORTHO05D008601 4.2e-58 229.6 351 38.5
SalBow1G1793 Salvia bowleyana HOM05D006713 ORTHO05D008601 1.7e-38 164.5 186 49.5
Glyma.12G204032 Glycine max HOM05D006713 ORTHO05D008601 1.7e-35 154.5 103 72.8
MELO3C001128.2 Cucumis melo HOM05D006713 ORTHO05D008601 7.5e-31 139.0 78 80.8
Os06g0343000 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 5.2e-24 116.3 100 61.0
MELO3C013610.2 Cucumis melo HOM05D006713 ORTHO05D008601 8.6e-19 99.0 73 69.9
MELO3C013612.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.5e-15 88.2 55 70.9
SEGI_39135 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 7.5e-15 85.9 97 44.3
Oeu023431.1 Olea europaea HOM05D006713 ORTHO05D008601 8.3e-14 82.4 55 76.4
Oeu045818.1 Olea europaea HOM05D006713 ORTHO05D008601 5.4e-13 79.7 84 48.8
MELO3C035062.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.6e-09 68.2 39 79.5
SEGI_34366 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 2.6e-07 60.8 47 51.1


User provided reference genes

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