Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 5.8e-47 190.7 104 100.0
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 8.1e-33 143.7 101 72.3
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 3.1e-32 141.7 85 82.4
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 5.3e-32 141.0 84 83.3
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 1.5e-31 139.4 85 78.8
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 1.0e-30 136.7 101 76.2
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 1.3e-30 136.3 85 77.6
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 1.7e-30 136.0 86 75.6
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 2.2e-30 135.6 85 76.5
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 2.2e-30 135.6 85 76.5
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 2.9e-30 135.2 99 67.7
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 3.8e-30 134.8 85 77.6
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 3.8e-30 134.8 101 67.3
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 3.8e-30 134.8 84 76.2
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 3.8e-30 134.8 85 77.6
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 3.8e-30 134.8 88 72.7
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 3.8e-30 134.8 101 75.2
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 4.9e-30 134.4 87 77.0
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 4.9e-30 134.4 85 77.6
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 8.4e-30 133.7 101 67.3
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 8.4e-30 133.7 85 75.3
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 1.1e-29 133.3 101 68.3
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 1.1e-29 133.3 101 67.3
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 1.4e-29 132.9 85 75.3
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 1.4e-29 132.9 85 76.5
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 1.4e-29 132.9 85 75.3
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.9e-29 132.5 88 71.6
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 1.9e-29 132.5 85 76.5
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 1.9e-29 132.5 85 76.5
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 1.9e-29 132.5 85 74.1
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 1.9e-29 132.5 85 74.1
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 2.5e-29 132.1 84 76.2
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 2.5e-29 132.1 84 76.2
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 2.5e-29 132.1 85 75.3
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 2.5e-29 132.1 101 67.3
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 2.5e-29 132.1 85 75.3
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 2.5e-29 132.1 85 72.9
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 2.5e-29 132.1 88 73.9
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 2.5e-29 132.1 85 74.1
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 3.2e-29 131.7 101 67.3
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 3.2e-29 131.7 101 67.3
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 3.2e-29 131.7 85 74.1
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.2e-29 131.7 85 76.5
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 4.2e-29 131.3 93 73.1
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 4.2e-29 131.3 84 76.2
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 4.2e-29 131.3 84 75.0
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 4.2e-29 131.3 102 65.7
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 4.2e-29 131.3 85 75.3
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 4.2e-29 131.3 85 74.1
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 5.5e-29 131.0 101 66.3
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 5.5e-29 131.0 85 74.1
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 5.5e-29 131.0 83 75.9
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 7.1e-29 130.6 85 74.1
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 7.1e-29 130.6 85 76.5
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 7.1e-29 130.6 85 70.6
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 7.1e-29 130.6 85 75.3
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 9.3e-29 130.2 85 71.8
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 1.2e-28 129.8 85 70.6
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 1.2e-28 129.8 101 63.4
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 2.1e-28 129.0 85 71.8
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 2.7e-28 128.6 101 63.4
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 2.7e-28 128.6 85 75.3
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 2.7e-28 128.6 85 69.4
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 3.5e-28 128.3 101 65.3
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 3.5e-28 128.3 83 75.9
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 3.5e-28 128.3 85 72.9
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 4.6e-28 127.9 101 65.3
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 4.6e-28 127.9 101 65.3
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 4.6e-28 127.9 101 65.3
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 7.9e-28 127.1 100 66.0
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 7.9e-28 127.1 85 72.9
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 1.0e-27 126.7 101 64.4
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 1.0e-27 126.7 101 64.4
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 1.8e-27 125.9 85 71.8
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 2.3e-27 125.6 101 64.4
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 2.3e-27 125.6 101 64.4
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 2.3e-27 125.6 101 63.4
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 3.0e-27 125.2 85 68.2
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 8.7e-27 123.6 84 71.4
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 3.3e-26 121.7 85 67.1
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 7.4e-26 120.6 78 74.4
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 7.4e-26 120.6 84 69.0
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 4.8e-25 117.9 84 64.3
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 1.1e-24 116.7 85 63.5
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 4.2e-21 104.8 77 68.8
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 7.2e-21 104.0 137 43.1
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 6.7e-19 97.4 82 61.0
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 1.1e-18 96.7 82 57.3
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 2.5e-18 95.5 84 60.7
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 8.2e-17 90.5 60 73.3
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 4.1e-16 88.2 45 97.8
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.5e-15 86.3 62 88.7
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 5.0e-14 81.3 41 97.6
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 8.5e-14 80.5 46 82.6
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 1.9e-13 79.3 59 76.3
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 1.9e-13 79.3 44 88.6
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.5e-13 79.0 62 66.1
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 2.5e-13 79.0 62 66.1
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 5.5e-13 77.8 44 84.1
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 2.7e-12 75.5 60 65.0
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 3.6e-12 75.1 44 79.5
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 3.9e-11 71.6 41 82.9
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 5.1e-11 71.2 41 85.4
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 3.3e-10 68.6 44 68.2
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 3.3e-10 68.6 35 85.7
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 2.2e-06 55.8 35 74.3


User provided reference genes

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