Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0125801 Rosa chinensis HOM05D003231 ORTHO05D343200 8.1e-67 256.9 128 100.0
RcHm_v2.0_Chr5g0039701 Rosa chinensis HOM05D003231 ORTHO05D340685 1.2e-12 77.0 48 75.0
RcHm_v2.0_Chr6g0312251 Rosa chinensis HOM05D003231 ORTHO05D003865 1.2e-12 77.0 114 45.6
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 2.6e-12 75.9 114 44.7
FvH4_2g30651 Fragaria vesca HOM05D003231 ORTHO05D003865 4.4e-12 75.1 114 43.9
FAN15G1275 Fragaria x ananassa HOM05D003231 ORTHO05D003865 7.5e-12 74.3 114 43.9
FAN24G1616 Fragaria x ananassa HOM05D003231 ORTHO05D003865 7.5e-12 74.3 114 43.0
BraA04t17473Z Brassica rapa HOM05D003231 ORTHO05D003865 4.2e-07 58.5 113 37.2
Lj1g0002631 Lotus japonicus HOM05D003231 ORTHO05D003865 4.2e-07 58.5 112 37.5
A04p18620 Brassica napus HOM05D003231 ORTHO05D003865 5.5e-07 58.2 114 36.8
C04p53940 Brassica napus HOM05D003231 ORTHO05D003865 5.5e-07 58.2 114 36.8
BcaC02g08477 Brassica carinata HOM05D003231 ORTHO05D003865 7.2e-07 57.8 114 36.8
BolC4t26942H Brassica oleracea HOM05D003231 ORTHO05D003865 7.2e-07 57.8 114 36.8
Thhalv10000179m.g Eutrema salsugineum HOM05D003231 ORTHO05D003865 7.2e-07 57.8 115 36.5
MD08G1133800 Malus domestica HOM05D003231 ORTHO05D003865 1.2e-06 57.0 113 35.4
TWI63G1568 Tripterygium wilfordii HOM05D003231 ORTHO05D003865 1.2e-06 57.0 115 35.7
MD15G1110400 Malus domestica HOM05D003231 ORTHO05D003865 1.6e-06 56.6 114 36.0
Sed0022904 Sechium edule HOM05D003231 ORTHO05D003865 1.6e-06 56.6 115 35.7
Sp4g03330 Schrenkiella parvula HOM05D003231 ORTHO05D003865 2.1e-06 56.2 115 37.4
AT2G24330 Arabidopsis thaliana HOM05D003231 ORTHO05D003865 2.7e-06 55.8 112 37.5
CARHR117760 Cardamine hirsuta HOM05D003231 ORTHO05D003865 2.7e-06 55.8 50 56.0
ECA236G1370 Erigeron canadensis HOM05D003231 ORTHO05D003865 2.7e-06 55.8 107 38.3
CiPaw.08G017500 Carya illinoinensis HOM05D003231 ORTHO05D003865 3.6e-06 55.5 111 37.8
BcaC01g01114 Brassica carinata HOM05D003231 ORTHO05D003865 6.1e-06 54.7 58 51.7
C03p88290 Brassica napus HOM05D003231 ORTHO05D003865 6.1e-06 54.7 58 51.7
BolC3t21138H Brassica oleracea HOM05D003231 ORTHO05D003865 6.1e-06 54.7 58 51.7
PGR044G0019 Punica granatum HOM05D003231 ORTHO05D003865 6.1e-06 54.7 113 35.4
DCAR_019594 Daucus carota HOM05D003231 ORTHO05D003865 8.0e-06 54.3 113 33.6
Manes.01G174800 Manihot esculenta HOM05D003231 ORTHO05D003865 8.0e-06 54.3 114 34.2
Peaxi162Scf00033g00092 Petunia axillaris HOM05D003231 ORTHO05D003865 8.0e-06 54.3 112 33.0


User provided reference genes

Program Settings