Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 2.9e-160 568.5 293 100.0
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 4.9e-152 541.2 293 94.9
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 2.3e-149 532.3 293 93.5
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 4.8e-147 524.6 319 86.5
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 3.2e-143 511.9 293 90.1
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 9.3e-143 510.4 293 88.4
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 6.0e-142 507.7 293 89.1
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 3.8e-136 488.4 293 85.7
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 3.0e-133 478.8 293 82.6
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 3.3e-132 475.3 293 83.3
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 2.8e-131 472.2 293 81.9
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 4.1e-130 468.4 293 80.9
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 4.1e-130 468.4 293 80.5
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 1.2e-129 466.8 293 79.5
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.5e-129 466.5 293 81.2
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.0e-129 466.1 293 81.6
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 2.6e-129 465.7 294 80.3
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.6e-129 465.7 294 81.0
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 2.6e-129 465.7 294 81.0
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.9e-129 464.5 292 79.8
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.9e-128 462.2 295 79.7
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.1e-127 460.3 293 79.5
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.1e-127 460.3 293 79.5
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.9e-127 459.5 293 78.8
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.5e-127 459.1 293 78.5
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 5.5e-127 458.0 295 79.7
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 5.5e-127 458.0 294 80.6
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 3.6e-126 455.3 295 79.3
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 4.7e-126 454.9 294 79.6
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 6.1e-126 454.5 295 79.3
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 1.0e-125 453.8 326 74.8
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.0e-125 453.8 296 78.0
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.8e-125 453.0 295 78.3
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.8e-125 453.0 295 78.3
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.3e-125 452.6 294 76.9
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 5.1e-125 451.4 294 78.2
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 6.7e-125 451.1 294 77.6
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 6.7e-125 451.1 294 78.2
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 8.8e-125 450.7 294 77.2
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.8e-125 450.7 294 77.2
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 8.8e-125 450.7 293 76.1
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 4.4e-124 448.4 291 78.4
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 7.4e-124 447.6 290 79.0
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 2.8e-123 445.7 291 79.4
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.7e-123 445.3 293 77.1
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 3.7e-123 445.3 297 77.1
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 6.3e-123 444.5 294 76.2
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.4e-122 443.4 292 78.4
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.8e-122 443.0 294 76.9
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.4e-122 442.6 295 76.9
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 2.4e-122 442.6 294 75.9
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 4.1e-122 441.8 294 76.9
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 7.0e-122 441.0 323 71.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.5e-121 439.9 293 76.8
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.6e-121 439.1 237 94.1
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 4.5e-121 438.3 306 74.2
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 4.5e-121 438.3 306 74.2
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 7.7e-121 437.6 296 75.7
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 8.5e-120 434.1 306 73.9
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 2.5e-119 432.6 285 80.0
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.2e-119 432.2 296 75.3
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.4e-117 426.8 295 72.9
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 6.7e-117 424.5 294 75.2
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.6e-116 422.5 295 72.9
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 7.4e-116 421.0 294 73.1
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 9.7e-116 420.6 294 74.5
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.4e-114 416.8 294 71.8
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.4e-114 416.8 291 73.9
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 3.1e-114 415.6 305 71.8
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 5.3e-114 414.8 317 68.8
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 7.0e-114 414.5 293 74.4
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 5.9e-113 411.4 294 71.8
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.0e-112 410.6 294 73.5
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.8e-112 408.7 295 68.8
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.0e-112 408.3 297 72.4
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 8.5e-112 407.5 295 68.5
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.1e-111 407.1 294 72.4
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.9e-111 406.4 291 70.4
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 7.2e-111 404.4 298 67.8
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.1e-110 402.9 293 71.7
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 8.0e-110 401.0 293 71.3
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 6.7e-109 397.9 294 69.4
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 6.7e-109 397.9 295 70.8
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.2e-108 397.1 296 70.6
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.5e-108 396.7 294 70.1
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 2.0e-108 396.4 293 68.6
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 3.3e-108 395.6 295 66.8
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 7.5e-108 394.4 271 73.8
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 9.7e-108 394.0 294 71.8
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.3e-107 393.7 293 71.0
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.3e-107 393.7 285 73.3
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 4.8e-107 391.7 352 60.2
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 6.3e-107 391.3 297 70.0
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 8.3e-107 391.0 321 66.0
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.1e-106 390.6 293 69.3
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 3.1e-106 389.0 293 70.0
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 4.1e-106 388.7 237 81.0
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 7.0e-106 387.9 295 66.4
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 9.1e-106 387.5 309 66.3
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 9.1e-106 387.5 296 68.9
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 2.7e-105 386.0 276 74.3
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 5.9e-105 384.8 292 68.5
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.5e-103 380.2 338 62.4
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 2.7e-102 375.9 287 69.7
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 8.0e-102 374.4 297 65.3
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.0e-101 374.0 288 69.8
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 8.8e-101 370.9 296 64.5
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.8e-99 365.9 294 64.6
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.4e-98 362.8 238 73.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 2.0e-97 359.8 286 65.7
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 1.0e-96 357.5 294 63.6
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.8e-96 355.5 295 65.4
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 3.3e-95 352.4 301 63.1
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.6e-94 349.0 294 62.9
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 7.5e-92 341.3 313 61.0
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 3.7e-91 339.0 294 65.6
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.1e-90 337.4 239 69.5
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 2.3e-88 329.7 196 83.2
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.3e-88 329.7 294 60.9
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 4.7e-86 322.0 205 80.5
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.4e-82 308.5 295 57.6
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.2e-81 307.4 307 54.1
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 3.5e-81 305.8 275 64.4
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 4.6e-81 305.4 205 75.1
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 4.3e-79 298.9 295 57.3
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.3e-79 298.9 293 53.6
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.2e-78 297.4 251 61.8
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 2.8e-78 296.2 295 56.6
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.5e-76 290.4 307 52.4
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.6e-76 289.7 217 71.4
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 2.9e-75 286.2 275 56.4
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 6.0e-73 278.5 205 68.8
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 8.6e-72 274.6 274 54.0
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.1e-70 270.0 207 67.1
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.6e-70 269.2 368 45.4
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 6.8e-69 265.0 288 52.8
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 3.2e-66 256.1 222 58.1
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 5.4e-66 255.4 327 49.2
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.7e-64 250.4 289 50.5
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 5.2e-61 238.8 196 60.7
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 6.0e-57 225.3 317 40.1
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 8.7e-56 221.5 179 66.5
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 4.0e-53 212.6 333 40.8
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 4.2e-50 202.6 123 78.9
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 8.7e-40 168.3 337 35.3
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 4.9e-35 152.5 101 76.2
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 6.7e-32 142.1 110 68.2
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.3e-27 127.9 311 32.5
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 6.1e-25 119.0 76 69.7
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 6.7e-24 115.5 82 74.4
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 2.2e-22 110.5 228 39.0
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 6.3e-22 109.0 146 49.3
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.4e-21 107.1 100 64.0
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 5.9e-20 102.4 56 92.9
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.9e-18 97.4 60 80.0
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.2e-17 94.7 328 29.9
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.8e-16 90.9 142 42.3
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 4.4e-07 59.7 101 38.6
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.3e-06 58.2 41 63.4
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 6.3e-06 55.8 37 64.9


User provided reference genes

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