Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 6.7e-60 233.8 117 100.0
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 4.1e-49 198.0 115 85.2
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 3.0e-44 181.8 115 76.5
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 6.8e-44 180.6 115 76.5
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-43 179.1 115 73.9
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.1e-41 171.8 112 72.3
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.7e-40 167.2 112 70.5
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 8.6e-39 163.7 116 67.2
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.8e-37 158.7 116 65.5
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 8.9e-36 153.7 116 64.7
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 2.0e-35 152.5 116 64.7
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 7.5e-35 150.6 107 66.4
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-32 143.3 116 60.3
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 1.5e-30 136.3 109 59.6
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.5e-30 133.7 112 60.7
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.5e-30 133.7 98 65.3
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.1e-29 131.0 98 64.3
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.3e-28 129.0 97 62.9
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.9e-28 127.1 106 60.4
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.2e-27 126.7 98 62.2
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-27 126.3 109 58.7
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.8e-27 123.6 93 61.3
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-26 123.2 93 61.3
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 2.9e-26 122.1 89 67.4
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 4.9e-26 121.3 107 52.3
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 1.4e-25 119.8 114 51.8
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 2.4e-25 119.0 114 51.8
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 4.1e-25 118.2 76 72.4
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 5.4e-25 117.9 114 50.9
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 5.4e-25 117.9 114 50.9
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 5.4e-25 117.9 116 50.9
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 1.6e-24 116.3 114 50.0
FAN18G0759 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-23 113.6 79 67.1
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-23 113.2 114 49.1
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 2.3e-23 112.5 110 46.4
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 3.0e-23 112.1 114 51.8
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 3.9e-23 111.7 81 64.2
RcHm_v2.0_Chr6g0286611 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-22 110.2 73 74.0
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 2.1e-21 105.9 116 48.3
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-20 103.6 114 48.2
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 1.4e-20 103.2 115 47.0
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 1.5e-19 99.8 114 45.6
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-19 99.8 106 44.3
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-19 99.8 103 47.6
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-19 99.4 85 57.6
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 2.6e-19 99.0 105 44.8
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 5.8e-19 97.8 61 73.8
RcHm_v2.0_Chr5g0004021 Rosa chinensis HOM05D000003 ORTHO05D006737 5.8e-19 97.8 72 68.1
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 9.8e-19 97.1 63 69.8
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 9.8e-19 97.1 100 46.0
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-18 96.3 85 56.5
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 6.4e-18 94.4 106 44.3
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.3e-18 94.0 96 43.8
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 1.1e-17 93.6 106 43.4
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 3.2e-17 92.0 102 41.2
FvH4_5g01660 Fragaria vesca HOM05D000003 ORTHO05D006737 4.1e-17 91.7 58 70.7
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 5.4e-17 91.3 98 49.0
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 7.0e-17 90.9 116 44.0
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 9.2e-17 90.5 114 40.4
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.2e-16 90.1 102 43.1
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 3.5e-16 88.6 114 40.4
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 6.0e-16 87.8 105 41.0
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 7.8e-16 87.4 81 54.3
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 1.0e-15 87.0 100 43.0
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.7e-15 86.3 92 45.7
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.7e-15 86.3 61 63.9
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 1.1e-14 83.6 87 43.7
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 4.3e-14 81.6 97 42.3
FAN19G0368 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.3e-14 81.6 79 49.4
FvH4_5g01582 Fragaria vesca HOM05D000003 ORTHO05D006737 1.2e-13 80.1 59 62.7
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.2e-13 80.1 57 68.4
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-13 80.1 90 44.4
RcHm_v2.0_Chr1g0348191 Rosa chinensis HOM05D000003 ORTHO05D006737 1.6e-13 79.7 75 49.3
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.8e-13 79.0 89 43.8
FAN08G0755 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.6e-13 78.6 62 61.3
FvH4_4g12942 Fragaria vesca HOM05D001338 ORTHO05D001239 4.7e-13 78.2 44 81.8
FAN04G0671 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.1e-13 77.4 69 50.7
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-12 77.0 83 42.2
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 1.8e-12 76.3 87 43.7
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 2.3e-12 75.9 76 46.1
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.1e-12 75.5 71 46.5
FAN03G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-11 73.6 67 55.2
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-11 73.6 89 39.3
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-11 73.6 89 39.3
RcHm_v2.0_Chr6g0260491 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-11 72.8 76 47.4
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 4.4e-11 71.6 83 43.4
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 5.8e-11 71.2 68 48.5
FvH4_6g31921 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-10 70.1 72 48.6
FAN01G1551 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-10 70.1 66 53.0
FAN22G0118 Fragaria x ananassa HOM05D001283 ORTHO05D001109 2.2e-10 69.3 70 47.1
FAN12G0644 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.4e-10 67.8 44 77.3
FAN07G0587 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.1e-08 62.8 68 44.1
FAN16G3138 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.5e-08 62.0 65 41.5
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 4.6e-08 61.6 92 34.8
FAN05G1347 Fragaria x ananassa HOM05D015760 ORTHO05D020672 7.8e-08 60.8 58 50.0
FAN08G2392 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-07 60.5 66 42.4
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 1.3e-07 60.1 103 36.9
Ah.04g154180 Amaranthus hybridus HOM05D000003 ORTHO05D006737 1.7e-07 59.7 107 33.6
FAN06G1488 Fragaria x ananassa HOM05D003102 ORTHO05D006737 1.7e-07 59.7 60 53.3
PSO339G5584 Papaver somniferum HOM05D007919 ORTHO05D006738 1.7e-07 59.7 94 39.4
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 2.3e-07 59.3 78 35.9
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 3.0e-07 58.9 65 41.5
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.9e-07 58.5 85 32.9
FAN12G1814 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.6e-07 57.4 62 45.2
Lj6A646G78 Lonicera japonica HOM05D000003 ORTHO05D000167 8.6e-07 57.4 107 32.7
QL05p007523 Quercus lobata HOM05D000003 ORTHO05D000167 8.6e-07 57.4 114 34.2
QL07p036969 Quercus lobata HOM05D000003 ORTHO05D000167 8.6e-07 57.4 109 31.2
RcHm_v2.0_Chr5g0038031 Rosa chinensis HOM05D009322 ORTHO05D010713 1.1e-06 57.0 98 30.6
FAN26G2731 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.9e-06 56.2 51 54.9
RcHm_v2.0_Chr1g0334811 Rosa chinensis HOM05D000003 ORTHO05D000022 1.9e-06 56.2 110 27.3
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 2.5e-06 55.8 100 29.0
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.5e-06 55.8 100 32.0
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 3.3e-06 55.5 75 36.0
Dinv32432 Davidia involucrata HOM05D000003 ORTHO05D011454 3.3e-06 55.5 109 29.4
FAN04G2364 Fragaria x ananassa HOM05D030836 ORTHO05D035801 3.3e-06 55.5 39 59.0
Dinv24219 Davidia involucrata HOM05D000003 ORTHO05D011454 4.3e-06 55.1 106 33.0
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 4.3e-06 55.1 46 47.8
FAN11G2439 Fragaria x ananassa HOM05D046867 ORTHO05D045776 4.3e-06 55.1 63 41.3
FAN17G0585 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.3e-06 55.1 95 34.7
RcHm_v2.0_Chr1g0356971 Rosa chinensis HOM05D000003 ORTHO05D000022 4.3e-06 55.1 98 27.6
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-06 54.7 109 33.9
FvH4_3g34330 Fragaria vesca HOM05D046867 ORTHO05D045776 5.6e-06 54.7 63 41.3
QL11p056556 Quercus lobata HOM05D000003 ORTHO05D000167 5.6e-06 54.7 97 32.0
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 7.3e-06 54.3 92 30.4
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 9.5e-06 53.9 81 35.8
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 9.5e-06 53.9 81 35.8


User provided reference genes

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