Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 7.8e-77 290.4 151 100.0
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.5e-67 258.8 140 94.3
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.5e-67 258.8 140 94.3
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 3.3e-67 258.5 140 94.3
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.3e-67 257.3 140 93.6
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.3e-67 257.3 140 93.6
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.1e-66 255.8 140 93.6
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.9e-62 242.7 140 85.0
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.2e-62 241.9 146 82.9
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 7.1e-62 240.7 146 83.6
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 2.1e-61 239.2 147 82.3
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.1e-61 239.2 147 81.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 2.7e-61 238.8 137 85.4
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.7e-61 238.8 140 85.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 4.6e-61 238.0 147 80.3
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.6e-61 238.0 140 84.3
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 6.0e-61 237.7 147 80.3
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 6.0e-61 237.7 137 86.1
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 6.0e-61 237.7 144 81.9
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.3e-60 236.5 147 81.0
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.3e-60 236.5 147 81.0
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.3e-60 236.5 147 80.3
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.8e-60 236.1 144 82.6
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-60 235.7 140 83.6
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 3.0e-60 235.3 140 83.6
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 5.1e-60 234.6 140 83.6
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 5.1e-60 234.6 139 83.5
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 5.1e-60 234.6 137 84.7
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.7e-60 234.2 140 82.9
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 6.7e-60 234.2 140 82.9
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 6.7e-60 234.2 147 78.2
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 8.7e-60 233.8 140 82.1
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 8.7e-60 233.8 140 82.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.1e-59 233.4 140 82.9
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.5e-59 233.0 147 79.6
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.5e-59 233.0 137 83.9
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.9e-59 232.6 137 83.9
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.9e-59 232.6 137 83.9
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.3e-59 231.9 140 82.1
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 3.3e-59 231.9 143 80.4
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.3e-59 231.9 140 82.9
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.3e-59 231.9 140 82.9
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.3e-59 231.9 140 81.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 4.3e-59 231.5 140 82.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 4.3e-59 231.5 140 82.1
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 5.6e-59 231.1 137 83.9
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 7.4e-59 230.7 147 77.6
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 7.4e-59 230.7 147 77.6
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 7.4e-59 230.7 140 82.9
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 7.4e-59 230.7 140 81.4
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 7.4e-59 230.7 137 81.8
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 7.4e-59 230.7 138 84.8
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.3e-58 229.9 137 82.5
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.3e-58 229.9 140 80.7
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-58 229.9 147 79.6
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.1e-58 229.2 143 79.7
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.8e-58 228.8 137 81.8
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 3.6e-58 228.4 137 81.8
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 4.8e-58 228.0 137 81.8
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 4.8e-58 228.0 138 82.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 8.1e-58 227.3 137 83.2
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.1e-57 226.9 140 80.7
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.1e-57 226.9 147 76.9
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.4e-57 226.5 141 81.6
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.4e-57 226.5 140 80.0
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.4e-57 225.7 137 80.3
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.4e-57 225.7 137 81.8
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.1e-57 225.3 140 80.0
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.1e-57 225.3 147 76.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.1e-57 225.3 137 82.5
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 3.1e-57 225.3 137 80.3
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 4.0e-57 224.9 147 75.5
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 4.0e-57 224.9 147 75.5
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 4.0e-57 224.9 144 76.4
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 5.3e-57 224.6 137 78.8
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 2.0e-56 222.6 140 79.3
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.4e-56 221.9 140 79.3
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 3.4e-56 221.9 137 80.3
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 4.5e-56 221.5 140 79.3
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.5e-56 221.5 140 79.3
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 4.5e-56 221.5 137 80.3
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 4.5e-56 221.5 158 72.2
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 4.5e-56 221.5 140 77.1
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 5.8e-56 221.1 140 79.3
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 5.8e-56 221.1 137 79.6
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 5.8e-56 221.1 140 79.3
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 7.6e-56 220.7 140 78.6
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 7.6e-56 220.7 140 78.6
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 7.6e-56 220.7 140 78.6
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 7.6e-56 220.7 140 78.6
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 7.6e-56 220.7 140 78.6
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 9.9e-56 220.3 140 77.9
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 9.9e-56 220.3 140 78.6
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.7e-55 219.5 147 73.5
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.7e-55 219.5 147 73.5
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 2.2e-55 219.2 139 79.1
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 3.8e-55 218.4 140 77.1
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.9e-55 218.0 141 78.7
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 8.4e-55 217.2 136 77.9
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.9e-54 216.1 140 77.1
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.9e-54 216.1 144 76.4
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 3.2e-54 215.3 140 76.4
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 7.1e-54 214.2 148 73.0
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.2e-53 213.4 140 75.7
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.7e-53 212.2 145 73.8
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.0e-52 208.8 175 63.4
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 5.1e-52 208.0 147 68.7
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 6.7e-52 207.6 149 71.8
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 3.3e-51 205.3 140 72.1
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.7e-50 201.8 147 70.1
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.8e-50 201.4 118 84.7
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.1e-49 200.3 140 72.1
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.8e-49 199.5 140 72.1
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 2.4e-49 199.1 147 67.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 5.8e-48 194.5 144 66.7
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 5.8e-48 194.5 144 66.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.0e-47 193.7 139 69.1
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.8e-47 191.8 122 80.3
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.1e-46 190.3 136 73.5
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.1e-46 190.3 119 77.3
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 3.2e-46 188.7 117 78.6
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 3.2e-46 188.7 118 78.0
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 4.2e-46 188.3 117 79.5
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 5.5e-46 188.0 117 78.6
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 9.3e-46 187.2 139 69.1
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 6.0e-45 184.5 137 63.5
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-44 183.3 117 76.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-44 183.3 118 76.3
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 6.7e-44 181.0 117 76.1
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-43 179.9 117 75.2
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.5e-43 179.9 137 67.2
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 5.7e-43 177.9 137 62.0
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 9.6e-43 177.2 146 58.9
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 4.8e-42 174.9 110 79.1
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 4.8e-42 174.9 110 79.1
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 4.8e-42 174.9 110 79.1
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.8e-41 172.9 137 61.3
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.8e-41 172.9 136 64.0
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.4e-41 172.6 119 76.5
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 5.3e-41 171.4 136 61.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.5e-40 169.9 136 61.0
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.5e-40 169.9 135 63.7
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 2.0e-40 169.5 138 61.6
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.2e-39 166.0 140 70.7
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 8.5e-39 164.1 116 72.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.4e-38 163.3 134 61.2
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.5e-38 162.5 96 83.3
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.6e-37 158.7 123 65.9
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.6e-37 158.3 90 92.2
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.3e-36 156.0 143 58.7
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.5e-35 153.3 101 77.2
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 2.2e-34 149.4 138 57.2
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 4.1e-33 145.2 132 58.3
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 5.5e-30 134.8 117 58.1
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 4.6e-29 131.7 114 60.5
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.4e-28 130.2 78 82.1
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 3.9e-28 128.6 89 73.0
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 5.1e-28 128.3 152 52.6
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 8.8e-28 127.5 73 93.2
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.0e-27 126.3 136 50.0
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.8e-17 93.2 119 42.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 5.3e-17 91.7 74 63.5
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 9.1e-17 90.9 52 86.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-16 90.5 52 84.6
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-16 90.5 52 84.6
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.0e-16 89.7 69 60.9
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 2.6e-16 89.4 52 84.6
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.5e-16 89.0 71 64.8
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 5.9e-16 88.2 52 84.6
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.9e-16 88.2 59 74.6
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 5.0e-15 85.1 50 82.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.2e-13 80.5 118 41.5
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.8e-12 76.6 41 87.8
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 5.9e-08 61.6 41 65.9
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 3.8e-07 58.9 40 72.5
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 6.5e-07 58.2 149 30.9


User provided reference genes

Program Settings