Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0124601 Rosa chinensis HOM05D005891 ORTHO05D007214 0.0e+00 1359.0 688 100.0
FvH4_6g24900 Fragaria vesca HOM05D005891 ORTHO05D007214 0.0e+00 1240.7 695 90.9
FAN14G5310 Fragaria x ananassa HOM05D005891 ORTHO05D007214 0.0e+00 1231.5 697 90.4
FAN05G1661 Fragaria x ananassa HOM05D005891 ORTHO05D007214 0.0e+00 1231.1 697 90.2
Prupe.4G274500 Prunus persica HOM05D005891 ORTHO05D007214 0.0e+00 1075.5 688 79.1
MD14G1081800 Malus domestica HOM05D005891 ORTHO05D007214 3.3e-308 1061.2 691 78.4
MD12G1089200 Malus domestica HOM05D005891 ORTHO05D007214 2.2e-307 1058.5 690 78.7
FAN02G2450 Fragaria x ananassa HOM05D005891 ORTHO05D007214 1.1e-245 853.6 492 90.0
Haze_19761 Corylus avellana HOM05D005891 ORTHO05D007214 6.2e-238 827.8 723 60.3
CANSAT80G2643 Cannabis sativa HOM05D005891 ORTHO05D007214 1.6e-230 803.1 707 59.8
CiPaw.09G043200 Carya illinoinensis HOM05D005891 ORTHO05D007214 1.4e-229 800.0 719 58.7
Atru.chr11.2650 Acer truncatum HOM05D005891 ORTHO05D007214 6.9e-229 797.7 746 57.0
QL07p004892 Quercus lobata HOM05D005891 ORTHO05D007214 2.0e-228 796.2 751 56.9
Thecc.04G215900 Theobroma cacao HOM05D005891 ORTHO05D007214 9.3e-226 787.3 717 58.7
TAR633G2073 Trochodendron aralioides HOM05D005891 ORTHO05D007214 1.2e-225 786.9 716 59.1
Gorai.006G219000 Gossypium raimondii HOM05D005891 ORTHO05D007214 1.6e-225 786.6 714 58.3
Manes.09G010000 Manihot esculenta HOM05D005891 ORTHO05D007214 1.3e-224 783.5 719 56.2
Potri.006G044500 Populus trichocarpa HOM05D005891 ORTHO05D007214 9.6e-223 777.3 724 56.9
Duzib212G0478 Durio zibethinus HOM05D005891 ORTHO05D007214 2.1e-222 776.2 720 57.1
Gohir.A09G201700 Gossypium hirsutum HOM05D005891 ORTHO05D007214 2.4e-221 772.7 714 57.1
COL.COLO4_20863 Corchorus olitorius HOM05D005891 ORTHO05D007214 4.0e-221 771.9 708 57.8
Dinv14832 Davidia involucrata HOM05D005891 ORTHO05D007214 6.4e-219 764.6 657 61.3
CANSAT80G2523 Cannabis sativa HOM05D005891 ORTHO05D007214 1.0e-216 757.3 707 57.1
Actinidia39186 Actinidia chinensis HOM05D005891 ORTHO05D007214 3.0e-216 755.7 722 55.5
Lj1g0021626 Lotus japonicus HOM05D005891 ORTHO05D007214 4.8e-214 748.4 721 55.1
TWI53G1500 Tripterygium wilfordii HOM05D005891 ORTHO05D007214 3.5e-209 732.3 722 53.9
Glyma.18G212600 Glycine max HOM05D005891 ORTHO05D007214 1.8e-208 729.9 720 54.7
Hma1.2p1_0275F.1_g110840 Hydrangea macrophylla HOM05D005891 ORTHO05D007214 3.9e-208 728.8 643 59.3
Lalb_Chr20g0110281 Lupinus albus HOM05D005891 ORTHO05D007214 2.5e-207 726.1 717 54.8
Sabra06G0030700 Salix brachista HOM05D005891 ORTHO05D007214 3.3e-207 725.7 692 55.9
Medtr7g090600 Medicago truncatula HOM05D005891 ORTHO05D007214 7.4e-207 724.5 721 53.7
Rhsim03G0031400 Rhododendron simsii HOM05D005891 ORTHO05D007214 1.3e-206 723.8 717 54.5
Ca_08420_v3 Cicer arietinum L. HOM05D005891 ORTHO05D007214 1.6e-206 723.4 719 54.7
Glyma.03G131800 Glycine max HOM05D005891 ORTHO05D007214 2.2e-206 723.0 720 54.6
TPR.G32752 Trifolium pratense HOM05D005891 ORTHO05D007214 1.1e-205 720.7 721 53.5
Phvul.001G127800 Phaseolus vulgaris HOM05D005891 ORTHO05D007214 3.6e-201 705.7 721 53.5
Aqoxy7G02967 Aquilegia oxysepala HOM05D005891 ORTHO05D007214 3.0e-200 702.6 725 53.0
Duzib151G0628 Durio zibethinus HOM05D005891 ORTHO05D007214 3.3e-199 699.1 704 53.8
Cfa016743 Carpinus fangiana HOM05D005891 ORTHO05D007214 8.2e-198 694.5 535 66.7
ClCG04G004100 Citrullus lanatus HOM05D005891 ORTHO05D007214 4.5e-196 688.7 723 51.7
GSVIVG01033562001 Vitis vinifera HOM05D005891 ORTHO05D007214 1.7e-195 686.8 691 55.0
A09p50110 Brassica napus HOM05D005891 ORTHO05D007214 7.9e-193 677.9 702 52.0
BraA09t40462Z Brassica rapa HOM05D005891 ORTHO05D007214 7.9e-193 677.9 702 52.0
AL5G38660 Arabidopsis lyrata HOM05D005891 ORTHO05D007214 2.6e-191 672.9 703 51.5
Sed0000553 Sechium edule HOM05D005891 ORTHO05D007214 5.7e-191 671.8 711 50.4
Nitab4.5_0008674g0030 Nicotiana tabacum HOM05D005891 ORTHO05D007214 6.3e-190 668.3 720 50.4
Ciclev10025261m.g Citrus clementina HOM05D005891 ORTHO05D007214 1.1e-189 667.5 530 64.9
PGR031G3404 Punica granatum HOM05D005891 ORTHO05D007214 1.4e-189 667.2 720 51.4
BolC8t50864H Brassica oleracea HOM05D005891 ORTHO05D007214 5.3e-189 665.2 705 51.3
Ciclev10031083m.g Citrus clementina HOM05D005891 ORTHO05D007214 5.3e-189 665.2 536 63.6
CsaV3_4G022060 Cucumis sativus L. HOM05D005891 ORTHO05D007214 5.3e-189 665.2 724 50.0
C08p32480 Brassica napus HOM05D005891 ORTHO05D007214 1.3e-187 660.6 703 51.1
Solyc04g017700.4 Solanum lycopersicum HOM05D005891 ORTHO05D007214 1.3e-187 660.6 720 50.0
BcaC07g40068 Brassica carinata HOM05D005891 ORTHO05D007214 2.9e-187 659.4 688 51.7
Nn7g36464 Nelumbo nucifera HOM05D005891 ORTHO05D007214 2.9e-187 659.4 725 50.1
THA.LOC104824423 Tarenaya hassleriana HOM05D005891 ORTHO05D007214 1.1e-186 657.5 705 49.9
Nitab4.5_0001618g0090 Nicotiana tabacum HOM05D005891 ORTHO05D007214 3.2e-186 656.0 722 49.4
Nn2g15043 Nelumbo nucifera HOM05D005891 ORTHO05D007214 1.8e-184 650.2 722 49.6
Oeu015292.1 Olea europaea HOM05D005891 ORTHO05D007214 3.0e-184 649.4 629 54.1
Cc06_g18470 Coffea canephora HOM05D005891 ORTHO05D007214 2.0e-183 646.7 729 48.6
Sc19g0008430 Simmondsia chinensis HOM05D005891 ORTHO05D007214 8.2e-182 641.3 716 49.0
PSO063G0854 Papaver somniferum HOM05D005891 ORTHO05D007214 1.3e-179 634.0 721 47.9
Lsat_1_v5_gn_3_23040 Lactuca sativa HOM05D005891 ORTHO05D007214 4.2e-178 629.0 711 48.5
Gohir.D09G195600 Gossypium hirsutum HOM05D005891 ORTHO05D007214 6.1e-177 625.2 543 60.4
HanXRQChr17g0536551 Helianthus annuus HOM05D005891 ORTHO05D007214 6.1e-177 625.2 732 47.8
BcaC07g40040 Brassica carinata HOM05D005891 ORTHO05D007214 1.4e-176 624.0 667 51.3
PSO170G1429 Papaver somniferum HOM05D005891 ORTHO05D007214 1.4e-176 624.0 721 47.9
PGSC0003DMG402007625 Solanum tuberosum HOM05D005891 ORTHO05D007214 2.3e-176 623.2 647 51.6
CAN.G1237.25 Capsicum annuum HOM05D005891 ORTHO05D007214 1.5e-175 620.5 682 49.7
MELO3C014212.2 Cucumis melo HOM05D005891 ORTHO05D007214 9.7e-175 617.8 655 51.9
Aa31LG10G12080 Aethionema arabicum HOM05D005891 ORTHO05D007214 3.7e-174 615.9 676 50.6
Sopen04g008780 Solanum pennellii HOM05D005891 ORTHO05D007214 8.2e-174 614.8 647 51.3
Migut.K00113 Erythranthe guttata HOM05D005891 ORTHO05D007214 4.1e-173 612.5 719 49.1
MBI16_g31793_MAGBIO Magnolia biondii HOM05D005891 ORTHO05D007214 1.6e-172 610.5 679 51.0
ATR0580G208 Amborella trichopoda HOM05D005891 ORTHO05D007214 2.5e-170 603.2 724 47.2
Psat3g075960 Pisum sativum HOM05D005891 ORTHO05D007214 2.5e-170 603.2 536 59.9
EL10Ac3g07174 Beta vulgaris HOM05D005891 ORTHO05D007214 3.0e-168 596.3 717 45.5
MD07G1151600 Malus domestica HOM05D005891 ORTHO05D007214 1.2e-167 594.3 483 66.5
DCAR_002883 Daucus carota HOM05D005891 ORTHO05D007214 4.4e-167 592.4 642 51.1
arahy.Tifrunner.gnm1.ann1.324ZN3 Arachis hypogaea HOM05D005891 ORTHO05D007214 7.5e-167 591.7 780 46.0
arahy.Tifrunner.gnm1.ann1.68N1MV Arachis hypogaea HOM05D005891 ORTHO05D007214 6.3e-166 588.6 774 45.6
Peaxi162Scf00130g01129 Petunia axillaris HOM05D005891 ORTHO05D007214 1.2e-164 584.3 719 46.5
Ah.13g076700 Amaranthus hybridus HOM05D005891 ORTHO05D007214 4.5e-164 582.4 722 46.3
Hund19119 Selenicereus undatus HOM05D005891 ORTHO05D007214 2.9e-163 579.7 769 43.0
Thhalv10005871m.g Eutrema salsugineum HOM05D005891 ORTHO05D007214 1.2e-161 574.3 532 55.3
Sp5g05400 Schrenkiella parvula HOM05D005891 ORTHO05D007214 1.6e-161 573.9 531 55.4
CARHR119890 Cardamine hirsuta HOM05D005891 ORTHO05D007214 6.8e-160 568.5 525 55.4
Carub.0005s2399 Capsella rubella HOM05D005891 ORTHO05D007214 8.3e-158 561.6 525 55.4
SalBow4G2335 Salvia bowleyana HOM05D005891 ORTHO05D007214 5.9e-156 555.4 721 44.8
AUR62026144 Chenopodium quinoa HOM05D005891 ORTHO05D007214 7.8e-156 555.1 687 46.4
AT3G57170 Arabidopsis thaliana HOM05D005891 ORTHO05D007214 5.0e-155 552.4 527 54.8
ECA246G3700 Erigeron canadensis HOM05D005891 ORTHO05D007214 8.6e-155 551.6 594 49.8
SalBow1G2481 Salvia bowleyana HOM05D005891 ORTHO05D007214 1.5e-154 550.8 735 45.3
AUR62030390 Chenopodium quinoa HOM05D005891 ORTHO05D007214 4.7e-153 545.8 688 46.5
Eucgr.A02290 Eucalyptus grandis HOM05D005891 ORTHO05D007214 1.4e-152 544.3 533 55.0
Zm00001eb364590 Zea mays HOM05D005891 ORTHO05D007214 2.0e-143 513.8 747 40.0
CDE08G1332 Ceratophyllum demersum HOM05D005891 ORTHO05D007214 7.5e-143 511.9 662 44.0
HPP92_010949 Vanilla planifolia HOM05D005891 ORTHO05D007214 3.4e-135 486.5 707 41.7
SGA_v2.0_scaffold94G28504 Striga asiatica HOM05D005891 ORTHO05D007214 1.2e-129 468.0 716 40.6
VMungo1383G0485 Vigna mungo HOM05D005891 ORTHO05D007214 3.4e-127 459.9 369 63.7
SEGI_09087 Sequoiadendron giganteum HOM05D005891 ORTHO05D007214 1.9e-122 444.1 607 42.2
Actinidia09292 Actinidia chinensis HOM05D005891 ORTHO05D007214 1.1e-120 438.3 730 37.5
Lj5A499T12 Lonicera japonica HOM05D005891 ORTHO05D007214 4.4e-119 433.0 433 53.1
vmacro21952 Vaccinium macrocarpon HOM05D005891 ORTHO05D007214 7.1e-117 425.6 455 51.4
FAN05G3805 Fragaria x ananassa HOM05D005891 ORTHO05D007214 6.7e-99 365.9 198 90.9
Prupe.5G000500 Prunus persica HOM05D005891 ORTHO05D007214 6.2e-97 359.4 229 84.7
vmacro20338 Vaccinium macrocarpon HOM05D005891 ORTHO05D007214 6.2e-97 359.4 645 37.4
unitig_748.g7229 Utricularia gibba HOM05D005891 ORTHO05D007214 4.9e-94 349.7 699 34.8
Pp3c24_1230 Physcomitrium patens HOM05D005891 ORTHO05D007214 1.1e-90 338.6 722 33.2
AagrBONN_evm.TU.Sc2ySwM_117.2192 Anthoceros agrestis HOM05D005891 ORTHO05D007214 2.8e-81 307.4 734 31.6
Mapoly0019s0088 Marchantia polymorpha HOM05D005891 ORTHO05D007214 1.2e-76 292.0 635 32.8
MD07G1151500 Malus domestica HOM05D005891 ORTHO05D007214 1.7e-62 245.0 226 59.3
Ciclev10013765m.g Citrus clementina HOM05D005891 ORTHO05D007214 1.1e-61 242.3 237 59.1
SMO367G0314 Selaginella moellendorffii HOM05D005891 ORTHO05D007214 1.9e-61 241.5 504 32.1
Cpa.g.sc66.74 Carica papaya HOM05D005891 ORTHO05D007214 2.7e-55 221.1 148 76.4
Os05g0290300 Oryza sativa ssp. japonica HOM05D005891 ORTHO05D007214 1.7e-49 201.8 208 47.6
CBR_g4216 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-46 189.5 259 42.1
FAN02G2483 Fragaria x ananassa HOM05D005891 ORTHO05D007214 1.9e-45 188.3 102 86.3
VMungo1383G2003 Vigna mungo HOM05D005891 ORTHO05D007214 4.2e-45 187.2 286 42.0
QL07p005099 Quercus lobata HOM05D005891 ORTHO05D007214 2.6e-42 177.9 142 66.2
Lj5C499G2 Lonicera japonica HOM05D005891 ORTHO05D007214 3.6e-36 157.5 212 48.6
TWI74G1459 Tripterygium wilfordii HOM05D005891 ORTHO05D007214 5.6e-29 133.7 147 46.9
Cfa022822 Carpinus fangiana HOM05D005891 ORTHO05D007214 1.9e-24 118.6 410 27.8
Glyma.19G133702 Glycine max HOM05D005891 ORTHO05D007214 3.0e-22 111.3 196 34.7
CSS0027694 Camellia sinensis var. sinensis HOM05D005891 ORTHO05D007214 5.6e-21 107.1 90 55.6
C04p35350 Brassica napus HOM05D005891 ORTHO05D032421 4.7e-20 104.0 229 36.2
BolC4t25089H Brassica oleracea HOM05D005891 ORTHO05D032421 4.7e-20 104.0 229 36.2
Actinidia39189 Actinidia chinensis HOM05D005891 ORTHO05D007214 5.8e-18 97.1 105 45.7
BcaC02g09903 Brassica carinata HOM05D005891 ORTHO05D032421 2.1e-12 78.6 73 54.8
Actinidia39187 Actinidia chinensis HOM05D005891 ORTHO05D007214 4.7e-12 77.4 67 55.2
Cpa.g.sc66.72 Carica papaya HOM05D005891 ORTHO05D007214 1.2e-10 72.8 84 44.0


User provided reference genes

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