Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0124201 Rosa chinensis HOM05D000439 ORTHO05D002302 1.9e-92 342.8 215 100.0
RcHm_v2.0_Chr3g0453091 Rosa chinensis HOM05D000439 ORTHO05D002302 1.2e-41 174.1 140 70.7
FvH4_6g04431 Fragaria vesca HOM05D000439 ORTHO05D002302 4.3e-28 129.0 145 55.2
FvH4_6g04550 Fragaria vesca HOM05D000439 ORTHO05D002302 7.3e-28 128.3 146 54.8
FAN14G4154 Fragaria x ananassa HOM05D000527 ORTHO05D000559 5.1e-21 105.5 170 43.5
FAN14G4589 Fragaria x ananassa HOM05D000439 ORTHO05D002302 5.1e-21 105.5 170 43.5
Prupe.6G334100 Prunus persica HOM05D000439 ORTHO05D002302 9.9e-17 91.3 91 52.7
Prupe.6G334600 Prunus persica HOM05D000439 ORTHO05D002302 1.9e-15 87.0 113 47.8
Prupe.6G334700 Prunus persica HOM05D000439 ORTHO05D002302 1.9e-15 87.0 124 49.2
RcHm_v2.0_Chr7g0205851 Rosa chinensis HOM05D000439 ORTHO05D002302 3.2e-15 86.3 148 41.9
FAN05G4862 Fragaria x ananassa HOM05D036768 ORTHO05D002302 5.4e-15 85.5 98 52.0
FAN05G2739 Fragaria x ananassa HOM05D000439 ORTHO05D002302 9.3e-15 84.7 104 47.1
MD04G1214600 Malus domestica HOM05D000439 ORTHO05D002302 9.3e-15 84.7 113 46.9
MD12G1229100 Malus domestica HOM05D000439 ORTHO05D002302 1.2e-14 84.3 148 41.9
FAN05G2771 Fragaria x ananassa HOM05D036768 ORTHO05D002302 1.6e-14 84.0 98 51.0
MD04G1214700 Malus domestica HOM05D000439 ORTHO05D002302 4.6e-14 82.4 141 43.3
Prupe.6G334500 Prunus persica HOM05D000439 ORTHO05D002302 7.9e-14 81.6 152 40.1
RcHm_v2.0_Chr3g0452961 Rosa chinensis HOM05D012224 ORTHO05D017959 1.0e-13 81.3 121 46.3
MD04G1214300 Malus domestica HOM05D000439 ORTHO05D002302 3.0e-13 79.7 57 68.4
RcHm_v2.0_Chr3g0453061 Rosa chinensis HOM05D000439 ORTHO05D002302 3.9e-13 79.3 77 51.9
RcHm_v2.0_Chr3g0453081 Rosa chinensis HOM05D000439 ORTHO05D002302 3.9e-13 79.3 77 51.9
FvH4_6g04380 Fragaria vesca HOM05D000439 ORTHO05D002302 8.7e-13 78.2 111 41.4
FAN14G5795 Fragaria x ananassa HOM05D000439 ORTHO05D002302 8.7e-13 78.2 111 41.4
MD12G1013700 Malus domestica HOM05D000439 ORTHO05D002302 1.9e-12 77.0 70 55.7
MD14G1011100 Malus domestica HOM05D000439 ORTHO05D002302 3.3e-12 76.3 70 54.3
Prupe.6G334200 Prunus persica HOM05D000439 ORTHO05D002302 9.6e-12 74.7 88 47.7
MD04G1214500 Malus domestica HOM05D000439 ORTHO05D002302 1.6e-11 73.9 105 43.8
MD12G1228900 Malus domestica HOM05D000439 ORTHO05D002302 1.6e-11 73.9 89 47.2
MD12G1229200 Malus domestica HOM05D000439 ORTHO05D002302 2.1e-11 73.6 126 45.2
RcHm_v2.0_Chr7g0237441 Rosa chinensis HOM05D000439 ORTHO05D002302 2.8e-11 73.2 82 50.0
FvH4_6g04390 Fragaria vesca HOM05D000439 ORTHO05D002302 3.6e-11 72.8 68 48.5
RcHm_v2.0_Chr3g0453001 Rosa chinensis HOM05D000439 ORTHO05D002302 3.6e-11 72.8 152 36.8
FvH4_6g04261 Fragaria vesca HOM05D000439 ORTHO05D002302 4.8e-11 72.4 100 47.0
FvH4_5g20491 Fragaria vesca HOM05D000439 ORTHO05D002302 6.2e-11 72.0 90 45.6
RcHm_v2.0_Chr3g0452971 Rosa chinensis HOM05D000439 ORTHO05D002302 6.2e-11 72.0 135 43.7
FAN09G2224 Fragaria x ananassa HOM05D000439 ORTHO05D034941 8.1e-11 71.6 100 46.0
FAN04G2682 Fragaria x ananassa HOM05D000439 ORTHO05D002302 1.1e-10 71.2 90 46.7
FAN09G4025 Fragaria x ananassa HOM05D000439 ORTHO05D002302 1.1e-10 71.2 159 35.2
MD04G1214400 Malus domestica HOM05D000439 ORTHO05D002302 1.1e-10 71.2 70 51.4
FvH4_6g04320 Fragaria vesca HOM05D000439 ORTHO05D002302 4.0e-10 69.3 168 36.3
FAN09G0983 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.0e-10 69.3 68 47.1
FAN09G3873 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.0e-10 69.3 68 47.1
FAN13G3290 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.0e-10 69.3 90 45.6
FAN18G3868 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.0e-10 69.3 90 44.4
FAN10G1999 Fragaria x ananassa HOM05D000439 ORTHO05D002302 6.9e-10 68.6 118 39.8
FAN10G2641 Fragaria x ananassa HOM05D000439 ORTHO05D002302 6.9e-10 68.6 118 39.8
FAN06G0252 Fragaria x ananassa HOM05D000439 ORTHO05D002302 9.0e-10 68.2 73 50.7
FAN14G4802 Fragaria x ananassa HOM05D000439 ORTHO05D002302 9.0e-10 68.2 168 35.7
MD03G1060500 Malus domestica HOM05D000439 ORTHO05D002302 9.0e-10 68.2 123 41.5
Prupe.1G243600 Prunus persica HOM05D000439 ORTHO05D002302 9.0e-10 68.2 130 40.8
FAN06G0033 Fragaria x ananassa HOM05D000439 ORTHO05D002302 1.5e-09 67.4 118 39.0
Migut.D00433 Erythranthe guttata HOM05D000439 ORTHO05D002302 5.8e-09 65.5 157 35.7
FAN01G0985 Fragaria x ananassa HOM05D000439 ORTHO05D002302 5.8e-09 65.5 108 38.0
TWI56G0175 Tripterygium wilfordii HOM05D000439 ORTHO05D002302 5.8e-09 65.5 92 40.2
FAN05G4994 Fragaria x ananassa HOM05D000439 ORTHO05D002302 7.6e-09 65.1 68 51.5
FAN03G1422 Fragaria x ananassa HOM05D000439 ORTHO05D002302 9.9e-09 64.7 116 37.1
RcHm_v2.0_Chr1g0379641 Rosa chinensis HOM05D000439 ORTHO05D002302 9.9e-09 64.7 108 39.8
RcHm_v2.0_Chr3g0452981 Rosa chinensis HOM05D000439 ORTHO05D002302 9.9e-09 64.7 115 41.7
FvH4_6g04410 Fragaria vesca HOM05D000439 ORTHO05D002302 1.3e-08 64.3 127 33.9
RcHm_v2.0_Chr3g0452991 Rosa chinensis HOM05D000439 ORTHO05D002302 1.3e-08 64.3 164 34.8
Duzib177G0767 Durio zibethinus HOM05D000439 ORTHO05D002302 2.2e-08 63.5 93 38.7
FvH4_7g30690 Fragaria vesca HOM05D000439 ORTHO05D002302 2.2e-08 63.5 167 33.5
QL03p002685 Quercus lobata HOM05D000439 ORTHO05D002302 2.2e-08 63.5 133 34.6
QL03p002736 Quercus lobata HOM05D000439 ORTHO05D002302 3.8e-08 62.8 119 36.1
Manes.09G160601 Manihot esculenta HOM05D000439 ORTHO05D002302 4.9e-08 62.4 117 34.2
CiPaw.07G011500 Carya illinoinensis HOM05D000439 ORTHO05D002302 6.4e-08 62.0 159 35.8
Dinv26588 Davidia involucrata HOM05D000439 ORTHO05D002302 8.4e-08 61.6 104 40.4
Sabra05G0041000 Salix brachista HOM05D000439 ORTHO05D002302 8.4e-08 61.6 143 35.7
Gorai.007G262900 Gossypium raimondii HOM05D000439 ORTHO05D002302 1.4e-07 60.8 93 37.6
Manes.09G160701 Manihot esculenta HOM05D000439 ORTHO05D002302 1.4e-07 60.8 95 36.8
Ciclev10000734m.g Citrus clementina HOM05D000439 ORTHO05D002302 1.9e-07 60.5 157 32.5
Nitab4.5_0001453g0030 Nicotiana tabacum HOM05D000439 ORTHO05D002302 1.9e-07 60.5 148 32.4
Ciclev10000115m.g Citrus clementina HOM05D000439 ORTHO05D002302 2.4e-07 60.1 124 33.9
Gohir.A11G236300 Gossypium hirsutum HOM05D000439 ORTHO05D002302 2.4e-07 60.1 93 37.6
Nitab4.5_0004296g0020 Nicotiana tabacum HOM05D000439 ORTHO05D002302 2.4e-07 60.1 148 32.4
Potri.005G044000 Populus trichocarpa HOM05D000439 ORTHO05D002302 2.4e-07 60.1 137 33.6
Rhsim07G0176800 Rhododendron simsii HOM05D000439 ORTHO05D002302 2.4e-07 60.1 162 35.8
PGSC0003DMG400022488 Solanum tuberosum HOM05D000439 ORTHO05D002302 2.4e-07 60.1 58 50.0
Gohir.D11G246820 Gossypium hirsutum HOM05D000439 ORTHO05D002302 3.2e-07 59.7 93 36.6
CSS0048396 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 4.2e-07 59.3 135 33.3
Potri.005G043900 Populus trichocarpa HOM05D000439 ORTHO05D002302 4.2e-07 59.3 143 35.0
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.5e-07 58.9 152 32.9
FAN05G1628 Fragaria x ananassa HOM05D000439 ORTHO05D002302 5.5e-07 58.9 152 32.9
Lj7C482G14 Lonicera japonica HOM05D000439 ORTHO05D002302 5.5e-07 58.9 59 47.5
CSS0004188 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 7.1e-07 58.5 135 31.9
CANSAT54G1104 Cannabis sativa HOM05D000439 ORTHO05D002302 7.1e-07 58.5 92 35.9
CAN.G134.216 Capsicum annuum HOM05D000439 ORTHO05D002302 7.1e-07 58.5 58 48.3
Gohir.A11G236340 Gossypium hirsutum HOM05D000439 ORTHO05D002302 7.1e-07 58.5 93 36.6
Nitab4.5_0007864g0010 Nicotiana tabacum HOM05D000439 ORTHO05D002302 7.1e-07 58.5 122 35.2
Thecc.05G251400 Theobroma cacao HOM05D000439 ORTHO05D002302 7.1e-07 58.5 59 47.5
Dinv26587 Davidia involucrata HOM05D000439 ORTHO05D002302 9.3e-07 58.2 75 44.0
Potri.005G044100 Populus trichocarpa HOM05D000439 ORTHO05D002302 9.3e-07 58.2 143 33.6
QL03p002724 Quercus lobata HOM05D000439 ORTHO05D002302 9.3e-07 58.2 93 36.6
EL10Ac3g05938 Beta vulgaris HOM05D000439 ORTHO05D002302 1.2e-06 57.8 71 40.8
Nitab4.5_0000245g0140 Nicotiana tabacum HOM05D000439 ORTHO05D002302 1.2e-06 57.8 73 43.8
Nitab4.5_0012670g0010 Nicotiana tabacum HOM05D000439 ORTHO05D036904 1.2e-06 57.8 122 35.2
Atru.chr2.611 Acer truncatum HOM05D000439 ORTHO05D002302 1.6e-06 57.4 164 31.1
AUR62015384 Chenopodium quinoa HOM05D000439 ORTHO05D002302 2.1e-06 57.0 70 38.6
Peaxi162Scf00225g00521 Petunia axillaris HOM05D000439 ORTHO05D002302 2.1e-06 57.0 58 46.6
Manes.09G160800 Manihot esculenta HOM05D000439 ORTHO05D012413 2.7e-06 56.6 100 39.0
Nitab4.5_0001165g0170 Nicotiana tabacum HOM05D000439 ORTHO05D001363 2.7e-06 56.6 104 38.5
TWI56G0825 Tripterygium wilfordii HOM05D000160 ORTHO05D000914 2.7e-06 56.6 136 33.1
COL.COLO4_36068 Corchorus olitorius HOM05D000439 ORTHO05D001363 3.5e-06 56.2 93 35.5
Gohir.D11G246880 Gossypium hirsutum HOM05D000160 ORTHO05D002302 3.5e-06 56.2 93 35.5
Gorai.007G263000 Gossypium raimondii HOM05D000439 ORTHO05D001363 3.5e-06 56.2 93 35.5
AUR62002306 Chenopodium quinoa HOM05D000439 ORTHO05D002302 4.6e-06 55.8 70 40.0
Rhsim01G0002600 Rhododendron simsii HOM05D000439 ORTHO05D001363 7.9e-06 55.1 58 50.0


User provided reference genes

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