Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0123881 Rosa chinensis HOM05D009914 ORTHO05D012375 1.5e-27 125.6 67 100.0
RcHm_v2.0_Chr2g0123801 Rosa chinensis HOM05D009914 ORTHO05D012375 5.1e-20 100.5 67 83.6
RcHm_v2.0_Chr2g0123821 Rosa chinensis HOM05D009914 ORTHO05D012375 3.3e-19 97.8 67 85.1
FAN23G0079 Fragaria x ananassa HOM05D009914 ORTHO05D012375 3.1e-17 91.3 67 79.1
RcHm_v2.0_Chr1g0314271 Rosa chinensis HOM05D009914 ORTHO05D012375 2.6e-16 88.2 69 76.8
RcHm_v2.0_Chr2g0123781 Rosa chinensis HOM05D009914 ORTHO05D012375 2.6e-16 88.2 67 74.6
FAN23G0046 Fragaria x ananassa HOM05D009914 ORTHO05D012375 1.4e-14 82.4 69 75.4
FAN23G0929 Fragaria x ananassa HOM05D009914 ORTHO05D012375 1.4e-14 82.4 69 75.4
FAN23G1284 Fragaria x ananassa HOM05D009914 ORTHO05D012375 1.4e-14 82.4 69 75.4
RcHm_v2.0_Chr1g0314291 Rosa chinensis HOM05D009914 ORTHO05D012375 1.8e-12 75.5 65 72.3
Prupe.2G006800 Prunus persica HOM05D009914 ORTHO05D012375 1.6e-10 68.9 69 60.9
RcHm_v2.0_Chr2g0123791 Rosa chinensis HOM05D009914 ORTHO05D012375 8.2e-10 66.6 72 68.1
FAN23G0148 Fragaria x ananassa HOM05D009914 ORTHO05D012375 1.4e-09 65.9 69 60.9
FAN23G1206 Fragaria x ananassa HOM05D009914 ORTHO05D012375 2.4e-09 65.1 69 59.4
FAN23G1595 Fragaria x ananassa HOM05D009914 ORTHO05D012375 5.3e-09 63.9 68 58.8
RcHm_v2.0_Chr2g0123871 Rosa chinensis HOM05D009914 ORTHO05D012375 5.3e-09 63.9 69 68.1
Prupe.2G006400 Prunus persica HOM05D009914 ORTHO05D012375 1.5e-08 62.4 69 59.4
Prupe.2G006300 Prunus persica HOM05D009914 ORTHO05D011200 4.5e-08 60.8 68 55.9
Prupe.2G006700 Prunus persica HOM05D009914 ORTHO05D011200 4.5e-08 60.8 68 55.9
RcHm_v2.0_Chr2g0123891 Rosa chinensis HOM05D009914 ORTHO05D012375 5.8e-08 60.5 69 66.7
FAN23G0010 Fragaria x ananassa HOM05D009914 ORTHO05D012375 1.3e-07 59.3 69 56.5
Prupe.2G006100 Prunus persica HOM05D009914 ORTHO05D011200 1.3e-07 59.3 68 54.4
Prupe.2G006200 Prunus persica HOM05D009914 ORTHO05D012375 1.7e-07 58.9 69 56.5
Prupe.2G006900 Prunus persica HOM05D009914 ORTHO05D012375 1.7e-07 58.9 70 58.6
Manes.10G148600 Manihot esculenta HOM05D011480 ORTHO05D011200 6.5e-07 57.0 71 54.9
Rhsim07G0052800 Rhododendron simsii HOM05D036690 ORTHO05D011200 6.5e-07 57.0 65 50.8
FAN23G1055 Fragaria x ananassa HOM05D023521 ORTHO05D012375 1.1e-06 56.2 57 68.4
Potri.001G226754 Populus trichocarpa HOM05D011480 ORTHO05D011200 1.1e-06 56.2 67 59.7
Manes.10G148400 Manihot esculenta HOM05D011480 ORTHO05D011200 1.9e-06 55.5 67 55.2
Potri.001G226400 Populus trichocarpa HOM05D011480 ORTHO05D011200 5.5e-06 53.9 67 53.7
Potri.001G226700 Populus trichocarpa HOM05D011480 ORTHO05D011200 5.5e-06 53.9 67 53.7
Manes.10G148500 Manihot esculenta HOM05D011480 ORTHO05D011200 7.1e-06 53.5 67 50.7
Potri.001G226500 Populus trichocarpa HOM05D011480 ORTHO05D011200 7.1e-06 53.5 67 59.7
Glyma.08G151100 Glycine max HOM05D012142 ORTHO05D011200 9.3e-06 53.1 67 53.7


User provided reference genes

Program Settings