Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0123101 Rosa chinensis HOM05D000539 ORTHO05D000592 7.0e-18 92.8 44 100.0
RcHm_v2.0_Chr3g0494181 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-16 88.2 44 93.2
RcHm_v2.0_Chr5g0023941 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-16 88.2 44 93.2
RcHm_v2.0_Chr5g0050961 Rosa chinensis HOM05D000539 ORTHO05D000592 8.5e-16 85.9 44 90.9
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 8.8e-13 75.9 43 76.7
RcHm_v2.0_Chr2g0108851 Rosa chinensis HOM05D000539 ORTHO05D000592 2.0e-12 74.7 43 76.7
RcHm_v2.0_Chr7g0197301 Rosa chinensis HOM05D000539 ORTHO05D000592 2.0e-12 74.7 43 76.7
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 2.0e-12 74.7 43 76.7
RcHm_v2.0_Chr2g0140381 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-12 74.3 43 74.4
RcHm_v2.0_Chr7g0209041 Rosa chinensis HOM05D000539 ORTHO05D000592 3.4e-12 73.9 43 74.4
RcHm_v2.0_Chr5g0059281 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-11 71.6 43 72.1
RcHm_v2.0_Chr2g0095661 Rosa chinensis HOM05D000539 ORTHO05D000592 2.8e-11 70.9 43 67.4
RcHm_v2.0_Chr3g0496551 Rosa chinensis HOM05D000539 ORTHO05D000592 6.3e-11 69.7 43 67.4
RcHm_v2.0_Chr6g0291811 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-10 68.6 43 67.4
RcHm_v2.0_Chr2g0120801 Rosa chinensis HOM05D000539 ORTHO05D000592 2.4e-10 67.8 43 65.1
RcHm_v2.0_Chr1g0326141 Rosa chinensis HOM05D000539 ORTHO05D000592 3.1e-10 67.4 43 67.4
RcHm_v2.0_Chr3g0481131 Rosa chinensis HOM05D000539 ORTHO05D000592 3.1e-10 67.4 43 67.4
RcHm_v2.0_Chr5g0055741 Rosa chinensis HOM05D000539 ORTHO05D000592 3.1e-10 67.4 43 67.4
RcHm_v2.0_Chr6g0299701 Rosa chinensis HOM05D000539 ORTHO05D000592 3.1e-10 67.4 43 67.4
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-09 65.1 42 69.0
RcHm_v2.0_Chr4g0424911 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-09 65.1 45 64.4
RcHm_v2.0_Chr2g0147501 Rosa chinensis HOM05D000539 ORTHO05D000592 3.5e-09 63.9 43 62.8
RcHm_v2.0_Chr6g0263591 Rosa chinensis HOM05D000539 ORTHO05D000592 4.5e-09 63.5 30 93.3
RcHm_v2.0_Chr5g0045831 Rosa chinensis HOM05D000539 ORTHO05D000592 5.9e-09 63.2 43 62.8
RcHm_v2.0_Chr5g0024781 Rosa chinensis HOM05D000539 ORTHO05D000592 1.0e-08 62.4 43 60.5
RcHm_v2.0_Chr2g0095171 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-08 61.6 43 69.8
RcHm_v2.0_Chr7g0238761 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-08 61.6 42 61.9
RcHm_v2.0_Chr5g0072991 Rosa chinensis HOM05D000539 ORTHO05D000592 2.2e-08 61.2 43 62.8
RcHm_v2.0_Chr7g0229451 Rosa chinensis HOM05D000539 ORTHO05D000592 2.2e-08 61.2 43 62.8
RcHm_v2.0_Chr5g0072081 Rosa chinensis HOM05D000539 ORTHO05D000592 2.9e-08 60.8 42 61.9
RcHm_v2.0_Chr2g0164701 Rosa chinensis HOM05D000539 ORTHO05D000592 3.8e-08 60.5 42 57.1
RcHm_v2.0_Chr4g0414241 Rosa chinensis HOM05D000539 ORTHO05D000592 3.8e-08 60.5 42 61.9
RcHm_v2.0_Chr6g0248241 Rosa chinensis HOM05D000539 ORTHO05D000592 3.8e-08 60.5 42 61.9
RcHm_v2.0_Chr7g0201751 Rosa chinensis HOM05D000539 ORTHO05D000592 3.8e-08 60.5 42 61.9
RcHm_v2.0_Chr7g0235441 Rosa chinensis HOM05D000539 ORTHO05D000592 3.8e-08 60.5 43 60.5
FvH4_6g20910 Fragaria vesca HOM05D000539 ORTHO05D000592 5.0e-08 60.1 46 60.9
RcHm_v2.0_Chr3g0495121 Rosa chinensis HOM05D000539 ORTHO05D000592 5.0e-08 60.1 42 61.9
RcHm_v2.0_Chr3g0495531 Rosa chinensis HOM05D000539 ORTHO05D000592 5.0e-08 60.1 42 61.9
RcHm_v2.0_Chr5g0071361 Rosa chinensis HOM05D000539 ORTHO05D000592 6.5e-08 59.7 42 59.5
RcHm_v2.0_Chr4g0393851 Rosa chinensis HOM05D000539 ORTHO05D000592 8.5e-08 59.3 43 60.5
RcHm_v2.0_Chr4g0407981 Rosa chinensis HOM05D000539 ORTHO05D000592 8.5e-08 59.3 43 60.5
RcHm_v2.0_Chr5g0032111 Rosa chinensis HOM05D000539 ORTHO05D000592 8.5e-08 59.3 42 61.9
RcHm_v2.0_Chr1g0325701 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-07 58.9 42 61.9
RcHm_v2.0_Chr6g0255101 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-07 58.9 42 61.9
DCAR_032014 Daucus carota HOM05D000539 ORTHO05D000592 1.9e-07 58.2 42 59.5
RcHm_v2.0_Chr7g0199851 Rosa chinensis HOM05D000539 ORTHO05D000592 4.2e-07 57.0 35 71.4
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 5.5e-07 56.6 42 57.1
FAN07G0141 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.2e-07 56.2 43 51.2
FAN22G1303 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.2e-07 56.2 43 51.2
FAN23G1554 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.2e-07 56.2 43 51.2
FAN28G2561 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.2e-07 56.2 43 51.2
RcHm_v2.0_Chr2g0141521 Rosa chinensis HOM05D000539 ORTHO05D000592 7.2e-07 56.2 42 54.8
RcHm_v2.0_Chr7g0228381 Rosa chinensis HOM05D000539 ORTHO05D000592 9.4e-07 55.8 41 56.1
FAN03G1226 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-06 55.1 43 55.8
FvH4_3g18051 Fragaria vesca HOM05D000539 ORTHO05D000592 2.1e-06 54.7 43 48.8
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 2.1e-06 54.7 43 48.8
FAN08G1656 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.1e-06 54.7 43 48.8
FAN08G3599 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.1e-06 54.7 43 48.8
FAN09G0062 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.1e-06 54.7 43 48.8
FAN10G1471 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.1e-06 54.7 43 48.8
FAN10G3810 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.1e-06 54.7 43 48.8
FAN23G1050 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.1e-06 54.7 43 48.8
FAN26G3042 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.1e-06 54.7 43 48.8
FvH4_3g24310 Fragaria vesca HOM05D000539 ORTHO05D000592 2.7e-06 54.3 43 53.5
FvH4_7g02995 Fragaria vesca HOM05D000539 ORTHO05D000592 2.7e-06 54.3 43 48.8
FAN18G2247 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.7e-06 54.3 43 48.8
RcHm_v2.0_Chr7g0227181 Rosa chinensis HOM05D000539 ORTHO05D000592 2.7e-06 54.3 37 67.6
FvH4_1g25002 Fragaria vesca HOM05D000539 ORTHO05D000592 3.6e-06 53.9 43 53.5
FvH4_2g04950 Fragaria vesca HOM05D000539 ORTHO05D000592 3.6e-06 53.9 43 53.5
FvH4_5g18421 Fragaria vesca HOM05D000539 ORTHO05D000592 3.6e-06 53.9 43 53.5
FvH4_6g53025 Fragaria vesca HOM05D000539 ORTHO05D000592 3.6e-06 53.9 43 53.5
FAN19G1975 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.6e-06 53.9 43 53.5
FAN20G0505 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.6e-06 53.9 43 48.8
FAN20G0984 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.6e-06 53.9 43 53.5
RcHm_v2.0_Chr4g0401821 Rosa chinensis HOM05D000539 ORTHO05D000592 3.6e-06 53.9 43 55.8
FvH4_1g27950 Fragaria vesca HOM05D000539 ORTHO05D000592 4.7e-06 53.5 43 53.5
FvH4_4g09041 Fragaria vesca HOM05D000539 ORTHO05D000592 4.7e-06 53.5 43 48.8
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 4.7e-06 53.5 43 48.8
FvH4_6g22904 Fragaria vesca HOM05D000539 ORTHO05D000592 4.7e-06 53.5 43 53.5
FAN26G2942 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.7e-06 53.5 43 53.5
FvH4_3g31715 Fragaria vesca HOM05D000539 ORTHO05D000592 6.1e-06 53.1 43 46.5
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 6.1e-06 53.1 43 46.5
FvH4_3g33070 Fragaria vesca HOM05D000539 ORTHO05D000592 8.0e-06 52.8 43 51.2
FvH4_4g10091 Fragaria vesca HOM05D000539 ORTHO05D000592 8.0e-06 52.8 43 46.5
FvH4_6g12431 Fragaria vesca HOM05D000539 ORTHO05D000233 8.0e-06 52.8 41 48.8
FvH4_6g12903 Fragaria vesca HOM05D000539 ORTHO05D000592 8.0e-06 52.8 43 51.2


User provided reference genes

Program Settings